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(-) Description

Title :  STRUCTURE OF S. AUREUS UNDECAPRENYL DIPHOSPHATE SYNTHASE IN COMPLEX WITH FPP AND SULFATE
 
Authors :  W. Zhu, E. Oldfield
Date :  22 Sep 12  (Deposition) - 19 Dec 12  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alpha-Helix, Prenyl Transferase, Cell Wall Biosynthesis, Farnesyl Diphosphate Binding, Isopentenyl Diphosphate Binding, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhu, Y. Zhang, W. Sinko, M. E. Hensler, J. Olson, K. J. Molohon, S. Lindert, R. Cao, K. Li, K. Wang, Y. Wang, Y. L. Liu, A. Sankovsky, C. A. De Oliveira, D. A. Mitchell, V. Nizet, J. A. Mccammon, E. Oldfiel
Antibacterial Drug Leads Targeting Isoprenoid Biosynthesis.
Proc. Natl. Acad. Sci. Usa V. 110 123 2013
PubMed-ID: 23248302  |  Reference-DOI: 10.1073/PNAS.1219899110

(-) Compounds

Molecule 1 - UNDECAPRENYL PYROPHOSPHATE SYNTHASE
    Chains: A
    EC Number: 2.5.1.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UPPS, SA1103
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 158879
    Strain: N315
    Synonym: UPP SYNTHASE, DI-TRANS,POLY-CIS-DECAPRENYLCISTRANSFERASE, DITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE SYNTHASE, UNDECAPRENYL DIPHOSPHATE SYNTHASE, UDS

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FPP1Ligand/IonFARNESYL DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FPP2Ligand/IonFARNESYL DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:33 , FPP A:302 , HOH A:425 , HOH A:427 , HOH A:432BINDING SITE FOR RESIDUE MG A 301
2AC2SOFTWAREMET A:32 , ASP A:33 , GLY A:34 , ASN A:35 , GLY A:36 , ARG A:37 , ARG A:46 , HIS A:50 , ALA A:76 , ARG A:84 , LEU A:95 , PHE A:99 , MG A:301 , HOH A:425 , HOH A:427 , HOH A:431 , HOH A:432 , HOH A:446BINDING SITE FOR RESIDUE FPP A 302
3AC3SOFTWAREARG A:201 , ARG A:207 , SER A:209 , ARG A:249 , PHE A:250 , GLY A:251 , HOH A:407 , HOH A:414 , HOH A:425 , HOH A:432 , HOH A:453BINDING SITE FOR RESIDUE SO4 A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H8E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H8E)

(-) Exons   (0, 0)

(no "Exon" information available for 4H8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains d4h8ea_ A: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...........eeee..................eeee...hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h8e A  19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGL 253
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H8E)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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        ISPT_STAAN | P60477: 4u82

(-) Related Entries Specified in the PDB File

4h2j 4h2m 4h2o 4h38 4h3a 4h3c