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(-) Description

Title :  THE X-RAY CRYSTAL STRUCTURE OF THE TRICHODERMA HARZIANUM ENDOGLUCANASE 3 FROM FAMILY GH12
 
Authors :  M. V. Liberato, I. Polikarpov
Date :  20 Sep 12  (Deposition) - 03 Apr 13  (Release) - 03 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Endoglucanase, Gh12 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. T. Prates, I. Stankovic, R. L. Silveira, M. V. Liberato, F. Henrique-Silva, N. Pereira, I. Polikarpov, M. S. Skaf
X-Ray Structure And Molecular Dynamics Simulations Of Endoglucanase 3 From Trichoderma Harzianum: Structural Organization And Substrate Recognition By Endoglucanases That Lack Cellulose Binding Module.
Plos One V. 8 59069 2013
PubMed-ID: 23516599  |  Reference-DOI: 10.1371/JOURNAL.PONE.0059069

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-GLUCANASE
    Chains: A, B
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAA
    Expression System Strain: MUTS
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: EGL3
    Organism Scientific: TRICHODERMA HARZIANUM
    Organism Taxid: 5544
    Strain: IOC-3844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H7M)

(-) Sites  (0, 0)

(no "Site" information available for 4H7M)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:10 -A:39
2B:10 -B:39

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H7M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H7M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H7M)

(-) Exons   (0, 0)

(no "Exon" information available for 4H7M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains d4h7ma_ A: automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.....eeee...eeee....hhhhheeeeeeeeeee...eeeeeeeeee..........eeee......hhhhh...eeeeeeeeeeeeeeeeeeeeeeee...........eeeeeeeeee.......eeeeeeee..eeeeeeeeee..eeeeeee......eeeeehhhhhhhhhhhh.......ee...eeeeeeeeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h7m A   1 EAEAEFQTSCEQYAVFSGGNGYSVSNNLWGQSAGSGFGCITVNSLNSAASWHADWQWSGGQNNVKSYPNVQIAIPQKRIVNSIGSMPTTASWSYTGSNLRADVAYDLFTASNPNHVTYSGDYELMIWLARYGDIGPIGSAQGTVTINGQSWTLYYGFNGAMQVYSFVAPSTVTNWSGDVKNFFNYLRDNKGYPASSQYVLSYQFGTEPFTGSGTLNVNSWTASINV 226
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      


Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4h7mb_ B: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.....eeee...eeee....hhhhheeeeeeeeeee...eeeeeeeeee..........eeee......hhhhh...eeeeeeeeeeeeeeeeeeeeeeee...........eeeeeeeeee.......eeeeeeee..eeeeeeeeee..eeeeeee......eeeeehhhhhhhhhhhh.......ee...eeeeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h7m B   1 EAEAEFQTSCEQYAVFSGGNGYSVSNNLWGQSAGSGFGCITVNSLNSAASWHADWQWSGGQNNVKSYPNVQIAIPQKRIVNSIGSMPTTASWSYTGSNLRADVAYDLFTASNPNHVTYSGDYELMIWLARYGDIGPIGSAQGTVTINGQSWTLYYGFNGAMQVYSFVAPSTVTNWSGDVKNFFNYLRDNKGYPASSQYVLSYQFGTEPFTGSGTLNVNSWTASIN 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H7M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H7M)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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