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(-) Description

Title :  STRUCTURE OF PRENYLAGARAMIDE MATURATION PROTEASE PAGA
 
Authors :  S. K. Nair, V. Agarwal
Date :  19 Sep 12  (Deposition) - 03 Oct 12  (Release) - 05 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Agarwal, E. Pierce, J. Mcintosh, E. W. Schmidt, S. K. Nair
Structures Of Cyanobactin Maturation Enzymes Define A Famil Of Transamidating Proteases.
Chem. Biol. V. 19 1411 2012
PubMed-ID: 23177196  |  Reference-DOI: 10.1016/J.CHEMBIOL.2012.09.012

(-) Compounds

Molecule 1 - N-TERMINAL CYANOBACTIN PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 562
    Gene: PAGA
    Organism Scientific: PLANKTOTHRIX AGARDHII NIES-596
    Organism Taxid: 443922

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H6W)

(-) Sites  (0, 0)

(no "Site" information available for 4H6W)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:159 -A:161
2A:261 -A:272
3B:159 -B:161
4B:261 -B:272

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:164 -Pro A:165
2Val B:164 -Pro B:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H6W)

(-) Exons   (0, 0)

(no "Exon" information available for 4H6W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4h6wa_ A: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......eeeee.......hhhhh..eeee.....hhhhhhhhhhhhh.............eeee...........hhhhhhhhhhhhhhh...eeee...eee.....hhhhhhhhhhhhhh..eeeee........eee.......eeeeee............hhhhhhheeeee...eeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..........hhhhhh....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h6w A   4 IPGLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLTRLPGSMSTHGTHVASIIFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQGKPVDFSNWGDAYQKQGILAPGKDILGAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILDAIEHLTGET 290
                                    13        23        33        43 ||     63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       
                                                                    45|                                                                                                                                                                                                                                          
                                                                     56                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4h6wb_ B: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh......eeeeee......hhhhh..eeee.....hhhhhhhhhhhhh.............eeeeee.........hhhhhhhhhhhhhhh...eeee...eee.....hhhhhhhhhhhhhh..eeeee........eee.......eeeeee............hhhhhh.eeeee...eeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..........hhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h6w B   4 IPGLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLTRLPSSMSTHGTHVASIIFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQGKPVDFSNWGDAYQKQGILAPGKDILGAKPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILDAIEHLTG 288
                                    13        23        33        43  ||    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283     
                                                                     46|                                                                                                                                                                                                                                       
                                                                      57
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H6W)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Val A:164 - Pro A:165   [ RasMol ]  
    Val B:164 - Pro B:165   [ RasMol ]  
 
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 Related Entries

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(-) Related Entries Specified in the PDB File

4h6v 4h6x