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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ISOCHORISMATASE (PP1826) FROM PSEUDOMONAS PUTIDA KT2440 AT 1.60 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  10 Sep 12  (Deposition) - 14 Nov 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Isochorismatase (Pp1826) From Pseudomonas Putida Kt2440 At 1. 60 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYDROLASE, ISOCHORISMATASE FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PP_1826
    Organism Scientific: PSEUDOMONAS PUTIDA KT2440
    Organism Taxid: 160488
    Strain: KT2440

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE13Mod. Amino AcidSELENOMETHIONINE
3SO46Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:29 , TYR A:34 , HIS A:70 , MSE A:131 , SER A:134 , SER A:135 , HOH A:315 , MSE B:7BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREASN A:106 , PHE A:108 , LYS A:109 , ARG A:142 , TYR A:146 , HOH A:322 , HOH A:411 , HOH A:490 , HOH A:517 , ARG B:142BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREHIS A:70 , LEU A:71 , GLY A:72 , PHE A:78 , LYS A:102 , ARG A:103 , HOH A:329 , HOH A:381 , ARG B:13BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREGLY A:0 , THR A:11 , ARG A:13 , HOH A:379 , HOH A:488 , HOH A:506 , THR B:73 , ARG B:77BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARETHR A:73 , GLY A:76 , ARG A:77 , ILE A:98 , VAL A:99 , HOH A:313 , HOH A:329 , LEU B:10BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWARESER A:42 , ALA A:158 , THR A:159 , HOH A:373BINDING SITE FOR RESIDUE EDO A 206
7AC7SOFTWAREARG A:142 , ASN B:106 , PHE B:108 , LYS B:109 , ARG B:142 , TYR B:146 , HOH B:315 , HOH B:343 , HOH B:357 , HOH B:402BINDING SITE FOR RESIDUE SO4 B 201
8AC8SOFTWARETYR B:34 , MSE B:131 , SER B:134 , SER B:135 , HOH B:323 , HOH B:412 , HOH B:424 , HOH B:452BINDING SITE FOR RESIDUE SO4 B 202
9AC9SOFTWARESER B:42 , ALA B:158 , THR B:159 , HOH B:367 , HOH B:418BINDING SITE FOR RESIDUE EDO B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H17)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:130 -Mse A:131
2Phe B:130 -Mse B:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H17)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H17)

(-) Exons   (0, 0)

(no "Exon" information available for 4H17)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains d4h17a_ A: automated matches                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.......hhh.eeeeee..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhh...........eeeee.........hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee...eee..eeehhhhhhhhhhhhhhhhh.eeehhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h17 A   0 GmSVPTTmFRLTGRDYPPAKLSHASLIIIDAQKEYLSGPLKLSGmDEAVANIARLLDAARKSGRPIIHVRHLGTVGGRFDPQGPAGQFIPGLEPLEGEIVIEKRmPNAFKNTKLHETLQELGHLDLIVCGFmSHSSVSTTVRRAKDYGYRCTLVEDASATRDLAFKDGVIPAAQIHQCEmAVmADNFACVAPTASLI 196
                             |     | 9        19        29        39    |   49        59        69        79        89        99    |  109       119       129 |     139       149       159       169       179  |    189       
                             |     7-MSE                               44-MSE                                                     104-MSE                    131-MSE                                         179-MSE             
                             1-MSE                                                                                                                                                                              182-MSE          


Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4h17b_ B: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.......hhhhheeeee..hhhhhh......hhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhh...........eeeee.........hhhhhhhhhh..eeeeeee...hhhhhhhhhhhhh..eeeeeeeeee...eee..eeehhhhhhhhhhhhhhhhh.eeehhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h17 B   3 VPTTmFRLTGRDYPPAKLSHASLIIIDAQKEYLSGPLKLSGmDEAVANIARLLDAARKSGRPIIHVRHLGTVGGRFDPQGPAGQFIPGLEPLEGEIVIEKRmPNAFKNTKLHETLQELGHLDLIVCGFmSHSSVSTTVRRAKDYGYRCTLVEDASATRDLAFKDGVIPAAQIHQCEmAVmADNFACVAPTASLI 196
                                |   12        22        32        42 |      52        62        72        82        92       102 |     112       122       132       142       152       162       172      |182       192    
                                7-MSE                               44-MSE                                                     104-MSE                    131-MSE                                         179-MSE             
                                                                                                                                                                                                             182-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H17)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H17)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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