4H0S - JenaLib

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Title :   CRYSTAL STRUCTURE ANALYSIS OF A BASIC PHOSPHOLIPASE A2 FROM TRIMERESURUS STEJNEGERI VENOM

Authors :   F. Zeng, L. Niu, X. Li, M. Teng

Date :   10 Sep 12 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Alpha-Helix, Glycerophospholipid, Venom Gland, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Zeng, L. Niu, X. Li, M. Teng
Crystal Structure Analysis Of A Basic Phospholipase A2 From Trimeresurus Stejnegeri Venom
To Be Published
PubMed: search

Molecule 1 - BASIC PHOSPHOLIPASE A2 HOMOLOG CTS-R6
	Chains	:	A, B, C
	EC Number	:	3.1.1.4
	Organism Common	:	CHINESE GREEN TREE VIPER
	Organism Scientific	:	VIRIDOVIPERA STEJNEGERI
	Organism Taxid	:	39682
	Synonym	:	SVPLA2 HOMOLOG

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	NA	5	Ligand/Ion	SODIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:77 , HOH A:315 , HOH B:378	BINDING SITE FOR RESIDUE NA A 201
2	AC2	SOFTWARE	GLU A:17 , ASN B:79	BINDING SITE FOR RESIDUE NA A 202
3	AC3	SOFTWARE	LYS B:7 , TYR B:75 , TRP B:77 , HOH B:331	BINDING SITE FOR RESIDUE NA B 201
4	AC4	SOFTWARE	GLU B:17 , ILE B:19 , LEU B:20	BINDING SITE FOR RESIDUE NA B 202
5	AC5	SOFTWARE	GLN C:4 , LYS C:7	BINDING SITE FOR RESIDUE NA C 201

Asymmetric Unit

No.	Residues
1	A:27	-	A:126
2	A:29	-	A:45
3	A:44	-	A:105
4	A:50	-	A:133
5	A:51	-	A:98
6	A:61	-	A:91
7	A:84	-	A:96
8	B:27	-	B:126
9	B:29	-	B:45
10	B:44	-	B:105
11	B:50	-	B:133
12	B:51	-	B:98
13	B:61	-	B:91
14	B:84	-	B:96
15	C:27	-	C:126
16	C:29	-	C:45
17	C:44	-	C:105
18	C:50	-	C:133
19	C:51	-	C:98
20	C:61	-	C:91
21	C:84	-	C:96

(no "Cis Peptide Bond" information available for 4H0S)

(no "SAP(SNP)/Variant" information available for 4H0S)

(no "PROSITE Motif" information available for 4H0S)

(no "Exon" information available for 4H0S)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains d4h0sa_ A: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.hhhhhhh............hhhhhhhhhhhhhhhh............eeee..eeee.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4h0s A   1 SLLQLRKMIKKMTNKEPILSYSKYGCNCGMGKPVDATDTCCSIHNCCYGKVTSCSTKWDSYSYSWENGDIVCDEKHPCKDVCECDKAVATCFRDNLDTYKKRNIFHPTSSCVKVSTPC 133
                                    10   ||   21        31|       44        54 ||||   72        82   ||   94       104       114       125        
                                        14|             31|                   56|||                 86|  92|                         122|         
                                         16              35                    59||                  88   94                          124         
                                                                                61|                                                               
                                                                                 67

Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4h0sb_ B: automated matches                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.hhhhhhh............hhhhhhhhhhhhhhh.............eeee..eeee.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4h0s B   1 SLLQLRKMIKKMTNKEPILSYSKYGCNCGRGKPVDATDTCCSIHNCCYGKVTSCSTKWDSYSYSWENGDIVCDEKHPCKDVCECDKAVATCFRDNLDTYKKRNIFHPTSSCTPC 133
                                    10   ||   21        34        44        54 ||||   72        82   ||   94       104       114       125||  
                                        14|            30|                    56|||                 86|  92|                         122| ||  
                                         16             34                     59||                  88   94                          124 ||  
                                                                                61|                                                     126|  
                                                                                 67                                                      131

Chain C from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4h0sc_ C: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.hhhhhhh............hhhhhhhhhhhhhhhh..........eeee..eeee.....hhhhhhhhhhhhhhhhhh....hhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4h0s C   1 SLLQLRKMIKKMTNKEPILSYSKYGCNCGMGKPVDATDTCCSIHNCCYGKVCSTKWDSYSYSWENGDIVCDEKHPCKDVCECDKAVATCFRDNLDTYKKRNIFHPTSSCVKVC 133
                                    10   ||   21        31|       44        54|||     74        84 ||   ||96       106       116     ||127 ||
                                        14|             31|                  55||                 86|  92|                         122|  129|
                                         16              35                   61|                  88   94                          124   133
                                                                               67

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Phospholipase A2, PLA2 (282)

Superfamily: Phospholipase A2, PLA2 (282)

Family: Vertebrate phospholipase A2 (271)

Protein domain: automated matches (75)

Viridovipera stejnegeri [TaxId: 39682] (2)

1a	d4h0sa_	A:
1b	d4h0sb_	B:
1c	d4h0sc_	C:

(no "CATH Domain" information available for 4H0S)

(no "Pfam Domain" information available for 4H0S)

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