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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETATE KINASE FROM CRYPTOCOCCUS NEOFORMANS
 
Authors :  T. M. Thaker, T. M. Iverson
Date :  09 Sep 12  (Deposition) - 05 Dec 12  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Atp-Dependent Acetate Kinase, Askha (Acetate And Sugar Kinase, Hsc70, Actin) Superfamily, Ribonuclease H-Like Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. M. Thaker, M. Tanabe, M. L. Fowler, A. M. Preininger, C. Ingram-Smith, K. S. Smith, T. M. Iverson
Crystal Structures Of Acetate Kinases From The Eukaryotic Pathogens Entamoeba Histolytica And Cryptococcus Neoformans
J. Struct. Biol. V. 181 185 2013
PubMed-ID: 23159802  |  Reference-DOI: 10.1016/J.JSB.2012.11.001

(-) Compounds

Molecule 1 - ACETATE KINASE
    Chains: A, B
    EC Number: 2.7.2.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ACKA
    Organism Scientific: CRYPTOCOCCUS NEOFORMANS
    Organism Taxid: 5207
    Strain: H99 SEROTYPE A

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H0P)

(-) Sites  (0, 0)

(no "Site" information available for 4H0P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H0P)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:25 -Pro A:26
2Ile B:25 -Pro B:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H0P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H0P)

(-) Exons   (0, 0)

(no "Exon" information available for 4H0P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4h0pa1 A:5-209 automated matches                                                                                                                                                                            d4h0pa2 A:210-435 automated matches                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....eeeeeeee...eeeeeeeee.......eeeeeeee.......eeeeeee.hhhhhhhhhhhhhhhhhh....hhh.eeeeeeee.........eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhh..hhhhhh...................hhhhhhhhhhhhhhhh..hhhhh.eeeee.....eeeeee..eeeee.....................hhhhhhh..............hhhhhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.....eee.........eeee..hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h0p A   5 AEYLLAINCGSSSIKGKLFAIPSFELLANLAVTNISSSDERVKIKTTWEEGKGKDSEEEADYGDKIRYASLVPILLDHLTNSTHVKKEEIKYVCHRVVHGGMHDKGIRVVKGHEEGLMEMDKLSEFAPLHNHRAVLAVKSCIDALPHHTSLLLFDTIFHRTIAPEVYTYALPPPDTELTMPLRKYGFHGLSYASIVQSLAEHLKKPSDQINVVVAHLGSGSSSCCIKNGKSIDTSMGLTPLEGLLGGTRSGTIDPTAIFHHTEDAASDANVGDFTVSKAEIILNKNSGFKALAGTTNFGHIIQNLDPSKCSEEDHEKAKLTYAVFLDRLLNFVAQYLFKLLSEVPIESIDGLVFSGGIGEKGAELRRDVLKKLAWLGAEVDEEANNSNSGGAVKCITKEGSKLKGWVVETDEEGWMARMAKEEFGFLEHHH 435
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434 


Chain B from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4h0pb1 B:5-209 automated matches                                                                                                                                                                            d4h0pb2 B:210-434 automated matches                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeee....eeeeeeeee.......eeeeeeee.......eeeeeee.hhhhhhhhhhhhhhhhhh....hhh.eeeeeeee.........eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhh.hhhhh.eeeee.....eeeeee..eeeee.....................hhhhhhh..............hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.....eee.........eeee..hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h0p B   5 AEYLLAINCGSSSIKGKLFAIPSFELLANLAVTNISSSDERVKIKTTWEEGKGKDSEEEADYGDKIRYASLVPILLDHLTNSTHVKKEEIKYVCHRVVHGGMHDKGIRVVKGHEEGLMEMDKLSEFAPLHNHRAVLAVKSCIDALPHHTSLLLFDTIFHRTIAPEVYTYALPPPDTELTMPLRKYGFHGLSYASIVQSLAEHLKKPSDQINVVVAHLGSGSSSCCIKNGKSIDTSMGLTPLEGLLGGTRSGTIDPTAIFHHTEDAASDANVGDFTVSKAEIILNKNSGFKALAGTTNFGHIIQNLDPSKCSEEDHEKAKLTYAVFLDRLLNFVAQYLFKLLSEVPIESIDGLVFSGGIGEKGAELRRDVLKKLAWLGAEVDEEANNSNSGGAVKCITKEGSKLKGWVVETDEEGWMARMAKEEFGFLEHH 434
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H0P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H0P)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:25 - Pro A:26   [ RasMol ]  
    Ile B:25 - Pro B:26   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

4h0o