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(-) Description

Title :  CRYSTAL STRUCTURE OF A LIPOCALIN FAMILY PROTEIN (BACOVA_00364) FROM BACTEROIDES OVATUS ATCC 8483 AT 1.95 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  06 Sep 12  (Deposition) - 07 Nov 12  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  An Eight-Stranded Beta Barrel, Lipocalin Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bacova_00364) From Bacteroides Ovatus Atcc 8483 At 1. 95 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BACOVA_00364, ZP_02063416.1
    Organism Scientific: BACTEROIDES OVATUS
    Organism Taxid: 411476
    Strain: ATCC 8483

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric Unit (5, 27)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3MSE16Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION
5UNL5Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (4, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 13)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION
5UNL3Ligand/IonUNKNOWN LIGAND

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:89BINDING SITE FOR RESIDUE ACT A 202
2AC2SOFTWARELYS B:60 , ASN B:70 , GLU B:97 , LEU B:108 , ASN B:113 , GLU B:146 , TRP B:148 , HOH B:318BINDING SITE FOR RESIDUE GOL B 204
3AC3SOFTWAREHOH A:208 , LYS C:60 , ASN C:70 , GLU C:97 , ASN C:102 , GLU C:146 , TRP C:148 , HOH C:207BINDING SITE FOR RESIDUE GOL C 203
4AC4SOFTWAREHIS E:126 , HOH E:554 , HOH E:593BINDING SITE FOR RESIDUE GOL E 205
5AC5SOFTWAREASN F:113 , PHE F:130 , HOH F:647 , HOH F:648 , HOH F:651BINDING SITE FOR RESIDUE NA F 201
6AC6SOFTWARELYS H:60 , ASN H:70 , GLU H:97 , ASN H:113 , GLU H:146 , TRP H:148BINDING SITE FOR RESIDUE GOL H 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GZV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GZV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GZV)

(-) Exons   (0, 0)

(no "Exon" information available for 4GZV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv A  25 KTKFKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    34        44        54        64        74        84        94       104  |    114       124       134       144       154         
                                                                                                            107-MSE                                       153-MSE      


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv B  31 ADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    40        50        60        70        80        90       100      |110       120       130       140       150  |    160   
                                                                                                      107-MSE                                       153-MSE      


Chain C from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv C  28 FKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    37        47        57        67        77        87        97       107       117       127       137       147     | 157      
                                                                                                         107-MSE                                       153-MSE      


Chain D from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv D  31 ADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    40        50        60        70        80        90       100      |110       120       130       140       150  |    160   
                                                                                                      107-MSE                                       153-MSE      


Chain E from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv E  23 QKKTKFKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    32        42        52        62        72        82        92       102    |  112       122       132       142       152|      162 
                                                                                                              107-MSE                                       153-MSE      


Chain F from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeeee....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv F  28 FKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    37        47        57        67        77        87        97       107       117       127       137       147     | 157      
                                                                                                         107-MSE                                       153-MSE      


Chain G from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeeeee.....eeeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv G  28 FKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSDLNGNELNTWYYETWKRVEmPAKFPEDIVR 163
                                    37        47        57        67        77        87        97       107       117       127       137       147     | 157      
                                                                                                         107-MSE                                       153-MSE      


Chain H from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee.......eeeeeeeeeee....eeeeee.......eeeeeeeeeeee..eeeeeeeee..hhhhh.eeeeeeeeee...eeeeeeee....eeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzv H  28 FKAADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKNIHLPmLDNQDNILEFEIKDNDYLHLKYFIKSLNTWYYETWKRVEmPAKFPEDIVR 163
                                    37        47        57        67        77        87        97       107       117       127     ||143       153       163
                                                                                                         107-MSE                   133|          153-MSE      
                                                                                                                                    140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GZV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GZV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4GZV)

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