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(-) Description

Title :  THE VON WILLEBRAND FACTOR A3 DOMAIN BINDING REGION OF TYPE III COLLAGEN STABILIZED BY THE CYSTEINE KNOT
 
Authors :  S. P. Boudko, H. P. Bachinger
Date :  05 Sep 12  (Deposition) - 17 Oct 12  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen Triple Helix, Type Iii Collagen Cysteine Knot, Blood Clotting, Von Willebrand Factor A3 Domain, 4-Hydroxylation, Extracellular Matrix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. P. Boudko, H. P. Bachinger
The Nc2 Domain Of Type Ix Collagen Determines The Chain Register Of The Triple Helix.
J. Biol. Chem. V. 287 44536 2012
PubMed-ID: 23132862  |  Reference-DOI: 10.1074/JBC.M112.417543

(-) Compounds

Molecule 1 - TYPE III COLLAGEN FRAGMENT IN A HOST PEPTIDE STABILIZED BY THE CYSTEINE KNOT
    Chains: A, B, C
    Engineered: YES
    Fragment: VON WILLEBRAND FACTOR BINDING FRAGMENT
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THIS SEQUENCE CONTAINS TWO FRAGMENTS OF HUMAN TYPE III COLLAGEN: THE VON WILLEBRAND FACTOR A3 DOMAIN BINDING REGION AND THE CYSTEINE KNOT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1HYP18Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 4GYX)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:27 -B:28

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GYX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GYX)

(-) Exons   (0, 0)

(no "Exon" information available for 4GYX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4gyx A  1 GPpGPpGPRGQpGVMGFpGPpGPpGPCC 28
                              |  |  10 |     |20|  |    
                              |  |     |     |  |  |    
                              3-HYP    |     |  |  |    
                                 6-HYP |     |  |  |    
                                      12-HYP |  |  |    
                                            18-HYP |    
                                               21-HYP   
                                                  24-HYP


Chain B from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ............................ Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4gyx B  1 GPpGPpGPRGQpGVMGFpGPpGPpGPCC 28
                              |  |  10 |     |20|  |    
                              3-HYP    |     |  |  |    
                                 6-HYP |     |  |  |    
                                      12-HYP |  |  |    
                                            18-HYP |    
                                               21-HYP   
                                                  24-HYP


Chain C from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  4gyx C  1 GPpGPpGPRGQpGVMGFpGPpGPpGP 26
                              |  |  10 |     |20|  |  
                              3-HYP    |     |  |  |  
                                 6-HYP |     |  |  |  
                                      12-HYP |  |  |  
                                            18-HYP |  
                                               21-HYP 
                                                  24-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GYX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GYX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GYX)

(-) Gene Ontology  (38, 38)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO3A1_HUMAN | P02461: 2v53 3dmw 4ae2 4aej 4ak3

(-) Related Entries Specified in the PDB File

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