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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RIO2 KINASE FROM CHAETOMIUM THERMOPHILUM
 
Authors :  S. Ferreira-Cerca, V. Sagar, T. Schafer, M. Diop, A. M. Wesseling, H. Lu E. Hurt, N. Laronde-Leblanc
Date :  05 Sep 12  (Deposition) - 17 Oct 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Rio-Type Ser/Thr Protein Kinase, Ribosome Biogenesis Factor, Pre-40S Maturation, Ribosomal Rna Processing, Pre-40S, Ribosomal Rna, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Ferreira-Cerca, V. Sagar, T. Schafer, M. Diop, A. M. Wesseling, H. Lu, E. Chai, E. Hurt, N. Laronde-Leblanc
Atpase-Dependent Role Of The Atypical Kinase Rio2 On The Evolving Pre-40S Ribosomal Subunit.
Nat. Struct. Mol. Biol. V. 19 1316 2012
PubMed-ID: 23104056  |  Reference-DOI: 10.1038/NSMB.2403

(-) Compounds

Molecule 1 - RIO2 KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7
    Expression System Strain: ROSETTA(TM) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CTHT_0033330, RIO2
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GYG)

(-) Sites  (0, 0)

(no "Site" information available for 4GYG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GYG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:296 -Pro A:297
2Val A:306 -Gly A:307

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GYG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GYG)

(-) Exons   (0, 0)

(no "Exon" information available for 4GYG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhh..eeeee....eeeeehhhhhhhhhhhhhhhh....eeeeeeee...eeeeeee.....eeeeeee...ee.......ee....hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..eeeee....ee.hhh....hhhhhhhhhhhhhhhhhhh.ee........eeeeeee.......eeeeeee......ee....hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gyg A   2 KLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGAKRLDAALEASGFTKKMAKDLEAAIREQQESR 342
                                    11        21        31        49        59        69        79        89        99       109       119       129       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341 
                                                                 40|                                                                                     137|                                                                                                                                                                                                          
                                                                  49                                                                                      140
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GYG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GYG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GYG)

(-) Gene Ontology  (5, 5)

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  Cis Peptide Bonds
    Gly A:296 - Pro A:297   [ RasMol ]  
    Val A:306 - Gly A:307   [ RasMol ]  
 

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        G0S5R3_CHATD | G0S5R3: 4gyi

(-) Related Entries Specified in the PDB File

4gyi CRYSTAL STRUCTURE OF THE RIO2 KINASE-ADP/MG2+- PHOSPHOASPARTATE COMPLEX FROM CHAETOMIUM THERMOPHILUM