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(-) Description

Title :  STRUCTURE OF THE SNX17 ATYPICAL FERM DOMAIN BOUND TO THE NPXY MOTIF OF P-SELECTIN
 
Authors :  R. Ghai, A. Bugarcic, H. Liu, S. J. Norwood, S. S. Li, R. D. Teasdale, B. M.
Date :  04 Sep 12  (Deposition) - 13 Mar 13  (Release) - 13 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ferm Domain, Protein Transport-Cell Adhesion Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Ghai, A. Bugarcic, H. Liu, S. J. Norwood, S. Skeldal, E. J. Coulson, S. S. Li, R. D. Teasdale, B. M. Collins
Structural Basis For Endosomal Trafficking Of Diverse Transmembrane Cargos By Px-Ferm Proteins.
Proc. Natl. Acad. Sci. Usa V. 110 E643 2013
PubMed-ID: 23382219  |  Reference-DOI: 10.1073/PNAS.1216229110

(-) Compounds

Molecule 1 - SORTING NEXIN-17
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FERM DOMAIN, UNP RESIDUES 111-388
    Gene: SNX17
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SNX17
 
Molecule 2 - P-SELECTIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: INTRACELLULAR DOMAIN, UNP RESIDUES 735-768
    Gene: SELP
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:124 , ALA A:172 , PHE A:173 , ARG A:202 , GLN A:227 , SER A:230 , ASP A:231 , ARG A:234 , TRP A:236 , HOH A:572 , HOH A:643BINDING SITE FOR RESIDUE GOL A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GXB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:281 -Pro A:282

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GXB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GXB)

(-) Exons   (0, 0)

(no "Exon" information available for 4GXB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeeeee...hhhhhhhhhhhhhh.hhhhhh.eeeeeeee.....eeeeee.....hhhhhhhh.....eeeeeee...hhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.......ee...eee......eeeeeeee..eeeee...eeee...eeeeeeee.............eeeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gxb A 112 VPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLREGSFRVTRMRCWRVTSSVPLPSGGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS 388
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|      318       328   ||  345       355       365       375       385   
                                                                                                                                                                                                                       301|                    332|                                                
                                                                                                                                                                                                                        309                     340                                                


Chain B from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ...eeee........ Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4gxb B 753 GTYGVFTNAAYDPTP 767
                                   762
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GXB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GXB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GXB)

(-) Gene Ontology  (59, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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  SNX17_HUMAN | Q15036
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SNX17_HUMAN | Q15036: 3fog 3lui 4tkn

(-) Related Entries Specified in the PDB File

1hes STRUCTURE OF P-SELECTIN BOUND TO THE MU2 ADAPTOR SUBUNIT OF THE AP2 ENDOCYTIC COMPLEX
3fog STRUCTURE OF SNX17 PX DOMAIN
3lui STRUCTURE OF SNX17 PX DOMAIN