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(-) Description

Title :  CRYSTAL STRUCTURE OF ACYL-COA THIOESTERASE TESB FROM YERSINIA PESTIS
 
Authors :  C. M. D. Swarbrick, J. K. Forwood
Date :  21 May 14  (Deposition) - 04 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Keywords :  Double-Hotdog, 4Hbt-Like, Thioesterase, Acyl-Coa Thioesterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Swarbrick, E. I. Patterson, J. K. Forwood
Crystallization Of The Acyl-Coa Thioesterase Tesb From Yersinia Pestis.
Acta Crystallogr. , Sect. F V. 69 188 2013
PubMed-ID: 23385765  |  Reference-DOI: 10.1107/S1744309113001267

(-) Compounds

Molecule 1 - ACYL-COA THIOESTERASE II
    Chains: A, B, C, D
    EC Number: 3.1.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG21
    Expression System Strain: BL21DE3 PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TESB, TESB Y1043 YP_0790, Y1043, YPO3141, YP_0790
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): AB  
Biological Unit 3 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QFW)

(-) Sites  (0, 0)

(no "Site" information available for 4QFW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QFW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QFW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QFW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QFW)

(-) Exons   (0, 0)

(no "Exon" information available for 4QFW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.eeee..eeee.....hhhhhhhhhhhhhhhh....eeeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee......ee.............hhhhhh......eeeee..............eeeeeeee......hhhhhhhhhhhhhh..hhhhhhhhhh.......eeeeeeeeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qfw A   4 ALEKLLDLLDLEKIEEGIFRGQSEQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNTMPDVPPPEGLMSETDIARQGPQPIEMRPVKFHNPLQGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFRLDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
                                    13        23   ||   38        48        58        68        78        88        98       108       118       128       138||     162       172       182       192       202       212       222       232       242       252       262       272       282   
                                                  27|                                                                                                       139|                                                                                                                                   
                                                   33                                                                                                        154                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..eeee..eeee.....hhhhhhhhhhhhhhhh....eeeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee......ee.............hhhhhhhh......eeeee..............eeeeeeee......hhhhhhhhhhhhh...hhhhhhhhhh.......eeeeeeeeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qfw B   4 ALEKLLDLLDLEKIEEGIFRGQSEQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNTMPDVPPPEGLMSETDIARQFSGPQPIEMRPVKFHNPLQGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFRLDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
                                    13        23   ||   38        48        58        68        78        88        98       108       118       128       138  ||   160       170       180       190       200       210       220       230       240       250       260       270       280     
                                                  27|                                                                                                         141|                                                                                                                                   
                                                   33                                                                                                          154                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeee..eeee.....hhhhhhhhhhhhhhhh....eeeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee......ee.......hhhhh.hhhhhhh...........eeeee..............eeeeeeee......hhhhhhhhhhhhh...hhhhhhhhhh.......eeeeeeeeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qfw C   4 ALEKLLDLLDLEKIEEGIFRGQSEQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNTMPDVPPPEGLMSETDIARQFSHKFIGPQPIEMRPVKFHNPLQGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFRLDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
                                    13        23   ||   38        48        58        68        78        88        98       108       118       128       138   ||  156       166       176       186       196       206       216       226       236       246       256       266       276         
                                                  27|                                                                                                          142|                                                                                                                                      
                                                   33                                                                                                           151                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....eeee..eeee......hhhhhhhhhhhhhhh....eeeeeeeeee.........eeeeeeeeee...eeeeeeeeee..eeeeeeeeeeee......ee.......hhhhh.hhhhhhhh....eeeee..............eeeeeeee......hhhhhhhhhhhhh...hhhhhhhhhh.......eeeeeeeeeeee.........eeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qfw D   4 ALEKLLDLLDLEKIEEGIFRGQSEQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNTMPDVPPPEGLMSETDIARQGPQPIEMRPVKFHNPLQGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFRLDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH 285
                                    13        23   ||   38        48        58        68        78        88        98       108       118       128       138||     162       172       182       192       202       212       222       232       242       252       262       272       282   
                                                  27|                                                                                                       139|                                                                                                                                   
                                                   33                                                                                                        154
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 4GWH: 1,16)

(no "SCOP Domain" information available for 4QFW, only for superseded entry 4GWH replaced by 4QFW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QFW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QFW)

(-) Gene Ontology  (3, 3)

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