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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LIPASE FROM PROTEUS MIRABILIS
 
Authors :  T. P. Korman
Date :  31 Aug 12  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Lipase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. P. Korman, J. U. Bowie
Crystal Structure Of Proteus Mirabilis Lipase, A Novel Lipase From The Proteus/Psychrophilic Subfamily Of Lipase Family I. 1.
Plos One V. 7 52890 2012
PubMed-ID: 23300806  |  Reference-DOI: 10.1371/JOURNAL.PONE.0052890

(-) Compounds

Molecule 1 - PUTATIVE LIPASE
    Chains: A
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21GOLD(DE3)
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: LIPA
    Organism Scientific: PROTEUS MIRABILIS
    Organism Taxid: 584
    Strain: HAUSER D1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CA2Ligand/IonCALCIUM ION
3GOL1Ligand/IonGLYCEROL
4IPA1Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:210 , ASP A:213 , ASP A:256 , GLN A:260 , VAL A:261 , LEU A:264 , HOH A:537BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREASN A:50 , GLU A:51 , HOH A:659 , HOH A:666BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWARELEU A:13 , SER A:79 , GLN A:80 , HOH A:503BINDING SITE FOR RESIDUE IPA A 403
4AC4SOFTWAREGLU A:167 , ASN A:170 , ILE A:200 , GLN A:201 , GLY A:202 , ARG A:220 , ASN A:223 , HOH A:558BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREILE A:19 , PHE A:60 , THR A:63 , GLU A:67 , 1PE A:406BINDING SITE FOR RESIDUE 1PE A 405
6AC6SOFTWAREALA A:153 , 1PE A:405BINDING SITE FOR RESIDUE 1PE A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GW3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:260 -Val A:261

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GW3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GW3)

(-) Exons   (0, 0)

(no "Exon" information available for 4GW3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4gw3a_ A: Lipase A                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhh.....hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhh..............ee..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh............hhhhh..eeeeeee....hhhhh..........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gw3 A   2 STKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNSNEVRGKQLWQFVQTLLQETQAKKVNFIGHSQGPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMRKDSIPEYIVEKVLNAFGTIISTFSGHDPQDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQGLIAGEKGNLLDPTHAAMRVLNTFFTEKQNDGLVGRSSMRLGKLIKDDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASKQL 287
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    || 153       163       173       183       193       203       213       223       233       243       253       263       273       283    
                                                                                                                                                                          146|                                                                                                                                          
                                                                                                                                                                           149
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GW3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GW3)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln A:260 - Val A:261   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B4EVM3_PROMH | B4EVM3: 4gxn 4hs9
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        B4EVM3_PROMH | B4EVM3: 3w9u

(-) Related Entries Specified in the PDB File

4gxn