4GUV - JenaLib

Title :   TETX DERIVATIZED WITH XENON

Authors :   G. Volkers, G. J. Palm, S. Panjikar, W. Hinrichs

Date :   29 Aug 12 (Deposition) - 10 Apr 13 (Release) - 12 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.73

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Rossmann Fold, Monooxygenase, Xenon, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Volkers, J. M. Damas, G. J. Palm, S. Panjikar, C. M. Soares, W. Hinrichs
Putative Dioxygen-Binding Sites And Recognition Of Tigecycline And Minocycline In The Tetracycline-Degrading Monooxygenase Tetx.
Acta Crystallogr. , Sect. D V. 69 1758 2013
PubMed-ID: 23999299 | Reference-DOI: 10.1107/S0907444913013802

Compounds

Molecule 1 - TETX2 PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 11-388
	Gene	:	TETX2
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	818

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 23)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	11	Ligand/Ion	SULFATE ION
3	XE	8	Ligand/Ion	XENON

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	2	Ligand/Ion	SULFATE ION
3	XE	-1	Ligand/Ion	XENON

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	3	Ligand/Ion	SULFATE ION
3	XE	-1	Ligand/Ion	XENON

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	3	Ligand/Ion	SULFATE ION
3	XE	-1	Ligand/Ion	XENON

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	SO4	3	Ligand/Ion	SULFATE ION
3	XE	-1	Ligand/Ion	XENON

Sites (23, 23)

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:23 , GLY A:24 , GLY A:25 , PRO A:26 , VAL A:27 , TYR A:45 , GLU A:46 , ARG A:47 , ASP A:48 , LEU A:60 , ARG A:117 , ARG A:121 , ARG A:137 , LYS A:138 , LEU A:139 , ALA A:167 , ASN A:168 , GLY A:169 , GLN A:192 , GLY A:310 , ASP A:311 , PRO A:318 , GLN A:322 , GLY A:323 , VAL A:324 , HOH A:506	BINDING SITE FOR RESIDUE FAD A 401
02	AC2	SOFTWARE	ARG A:137 , LYS A:156	BINDING SITE FOR RESIDUE SO4 A 402
03	AC3	SOFTWARE	LYS A:138 , LYS A:173	BINDING SITE FOR RESIDUE SO4 A 403
04	AC4	SOFTWARE	ILE A:237 , PHE A:267 , TYR A:274	BINDING SITE FOR RESIDUE XE A 404
05	AC5	SOFTWARE	ASN A:221 , PHE A:239 , GLU A:266	BINDING SITE FOR RESIDUE XE A 405
06	AC6	SOFTWARE	GLY B:23 , GLY B:25 , PRO B:26 , VAL B:27 , TYR B:45 , GLU B:46 , ARG B:47 , ASP B:48 , LEU B:60 , ARG B:117 , ARG B:121 , ARG B:137 , LYS B:138 , LEU B:139 , ALA B:167 , ASN B:168 , GLY B:169 , GLN B:192 , LEU B:287 , GLY B:310 , ASP B:311 , PRO B:318 , GLN B:322 , GLY B:323 , VAL B:324 , HOH B:506	BINDING SITE FOR RESIDUE FAD B 401
07	AC7	SOFTWARE	ARG B:54	BINDING SITE FOR RESIDUE SO4 B 402
08	AC8	SOFTWARE	ARG B:137 , LYS B:156	BINDING SITE FOR RESIDUE SO4 B 403
09	AC9	SOFTWARE	ARG B:47 , LYS B:138	BINDING SITE FOR RESIDUE SO4 B 404
10	BC1	SOFTWARE	LEU B:223 , ILE B:237 , PHE B:267 , TYR B:274 , ILE B:278	BINDING SITE FOR RESIDUE XE B 405
11	BC2	SOFTWARE	ASN B:221 , PHE B:239 , GLU B:266	BINDING SITE FOR RESIDUE XE B 406
12	BC3	SOFTWARE	GLY C:23 , GLY C:25 , PRO C:26 , VAL C:27 , TYR C:45 , GLU C:46 , ARG C:47 , ASP C:48 , LEU C:60 , ARG C:117 , ARG C:121 , ARG C:137 , LYS C:138 , LEU C:139 , ALA C:167 , ASN C:168 , GLY C:169 , LEU C:287 , GLY C:310 , ASP C:311 , PRO C:318 , GLN C:322 , GLY C:323 , VAL C:324	BINDING SITE FOR RESIDUE FAD C 401
13	BC4	SOFTWARE	GLU C:52 , ALA C:53 , ARG C:54	BINDING SITE FOR RESIDUE SO4 C 402
14	BC5	SOFTWARE	ARG C:137 , LYS C:156	BINDING SITE FOR RESIDUE SO4 C 403
15	BC6	SOFTWARE	LYS C:138	BINDING SITE FOR RESIDUE SO4 C 404
16	BC7	SOFTWARE	ILE C:237 , PHE C:267 , TYR C:274	BINDING SITE FOR RESIDUE XE C 405
17	BC8	SOFTWARE	PHE C:239 , GLU C:266 , PHE C:267	BINDING SITE FOR RESIDUE XE C 406
18	BC9	SOFTWARE	GLY D:23 , GLY D:25 , PRO D:26 , VAL D:27 , TYR D:45 , GLU D:46 , ARG D:47 , ASP D:48 , LEU D:60 , ARG D:117 , ARG D:121 , ARG D:137 , LYS D:138 , LEU D:139 , ALA D:167 , ASN D:168 , GLY D:169 , GLN D:192 , LEU D:287 , GLY D:310 , ASP D:311 , PRO D:318 , GLN D:322 , GLY D:323 , VAL D:324	BINDING SITE FOR RESIDUE FAD D 401
19	CC1	SOFTWARE	ARG D:54	BINDING SITE FOR RESIDUE SO4 D 402
20	CC2	SOFTWARE	ARG D:137 , LYS D:156	BINDING SITE FOR RESIDUE SO4 D 403
21	CC3	SOFTWARE	ARG D:47 , HOH D:511	BINDING SITE FOR RESIDUE SO4 D 404
22	CC4	SOFTWARE	LEU D:223 , ILE D:237 , PHE D:267	BINDING SITE FOR RESIDUE XE D 405
23	CC5	SOFTWARE	ASN D:221 , PHE D:239 , GLU D:266 , PHE D:267	BINDING SITE FOR RESIDUE XE D 406

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhhhhhh...eeeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeee.hhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eeehhhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv A  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
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                                                                                                                                                                                                                                                                    250

Chain B from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeee.hhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee...........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eee.hhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv B  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  254       264       274       284       294       304       314       324       334       344       354       364       374        
                                                                                                                                                                                                                                                                   245|                                                                                                                                     
                                                                                                                                                                                                                                                                    249

Chain C from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeeeehhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eeehhhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv C  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
                                                                                                                                                                                                                                                                   245|                                                                                                                                    
                                                                                                                                                                                                                                                                    250

Chain D from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhhhhhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeeeehhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eee.hhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv D  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
                                                                                                                                                                                                                                                                   245|                                                                                                                                    
                                                                                                                                                                                                                                                                    250

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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