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(-) Description

Title :  CRYSTAL STRUCTURE OF GSTE2 ZAN/U VARIANT FROM ANOPHELES GAMBIAE
 
Authors :  O. Mayans, F. Lu
Date :  28 Aug 12  (Deposition) - 12 Mar 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Gst, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. N. Mitchell, D. J. Rigden, A. J. Dowd, F. Lu, C. S. Wilding, D. Weetman S. Dadzie, A. M. Jenkins, K. Regna, P. Boko, L. Djogbenou, M. A. Muskavitch, H. Ranson, M. J. Paine, O. Mayans, M. J. Donnelly
Metabolic And Target-Site Mechanisms Combine To Confer Strong Ddt Resistance In Anopheles Gambiae.
Plos One V. 9 92662 2014
PubMed-ID: 24675797  |  Reference-DOI: 10.1371/JOURNAL.PONE.0092662

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE E2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: POPIN
    Expression System Strain: ROSETTA2
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2GOL1Ligand/IonGLYCEROL
3GSH4Ligand/IonGLUTATHIONE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2GOL1Ligand/IonGLYCEROL
3GSH2Ligand/IonGLUTATHIONE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2GOL-1Ligand/IonGLYCEROL
3GSH2Ligand/IonGLUTATHIONE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:12 , PRO A:14 , LEU A:36 , HIS A:41 , HIS A:53 , THR A:54 , ILE A:55 , PRO A:56 , GLU A:67 , SER A:68 , PHE A:108 , ARG A:112 , HOH A:401 , HOH A:449BINDING SITE FOR RESIDUE GSH A 301
2AC2SOFTWAREVAL A:76 , THR A:77 , GLY A:80 , ASP A:82 , ASP A:83 , TYR A:86 , LYS A:88BINDING SITE FOR RESIDUE 1PE A 302
3AC3SOFTWARESER B:12 , PRO B:14 , LEU B:36 , HIS B:41 , HIS B:53 , THR B:54 , ILE B:55 , PRO B:56 , GLU B:67 , SER B:68 , PHE B:108 , ARG B:112 , HOH B:452 , HOH B:459BINDING SITE FOR RESIDUE GSH B 301
4AC4SOFTWAREVAL B:76 , GLY B:80 , ASP B:82 , ASP B:83 , TYR B:86 , LYS B:88BINDING SITE FOR RESIDUE GOL B 302
5AC5SOFTWARESER C:12 , PRO C:14 , LEU C:36 , HIS C:41 , HIS C:53 , THR C:54 , ILE C:55 , PRO C:56 , GLU C:67 , SER C:68 , PHE C:108 , ARG C:112 , HOH C:403 , HOH C:406 , HOH C:408 , HOH C:415BINDING SITE FOR RESIDUE GSH C 301
6AC6SOFTWAREPRO D:14 , LEU D:36 , HIS D:41 , HIS D:53 , THR D:54 , ILE D:55 , GLU D:67 , SER D:68 , PHE D:108 , ARG D:112BINDING SITE FOR RESIDUE GSH D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GSN)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:55 -Pro A:56
2Ile B:55 -Pro B:56
3Ile C:55 -Pro C:56
4Ile D:55 -Pro D:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GSN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GSN)

(-) Exons   (0, 0)

(no "Exon" information available for 4GSN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d4gsna1 A:2-86 automated matches                                                     d4gsna2 A:87-220 automated matches                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gsn A   2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFTFERILFFGKSDIPEDRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSCISTVSSIMGVVPLEQSKHPRIYAWIDRLKQLPYYEEVNGGGGTDLGKFVLAKKEENAK 220
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         


Chain B from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains d4gsnb1 B:2-86 automated matches                                                     d4gsnb2 B:87-221 automated matches                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gsn B   2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFTFERILFFGKSDIPEDRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSCISTVSSIMGVVPLEQSKHPRIYAWIDRLKQLPYYEEVNGGGGTDLGKFVLAKKEENAKA 221
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221


Chain C from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d4gsnc1 C:2-86 automated matches                                                     d4gsnc2 C:87-220 automated matches                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gsn C   2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFTFERILFFGKSDIPEDRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSCISTVSSIMGVVPLEQSKHPRIYAWIDRLKQLPYYEEVNGGGGTDLGKFVLAKKEENAK 220
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         


Chain D from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains d4gsnd1 D:2-86 automated matches                                                     d4gsnd2 D:87-219 automated matches                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gsn D   2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFTFERILFFGKSDIPEDRVEYVQKSYELLEDTLVDDFVAGPTMTIADFSCISTVSSIMGVVPLEQSKHPRIYAWIDRLKQLPYYEEVNGGGGTDLGKFVLAKKEENA 219
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GSN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GSN)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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2il3 2imi