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(-) Description

Title :  CRYSTAL STRUCTURE OF ATG7 NTD K14A F16A D18A MUTANT
 
Authors :  S. E. Kaiser, K. Mao, A. M. Taherbhoy, S. Yu, J. L. Olszewski, D. M. Duda, I A. Deng, T. D. Fenn, D. J. Klionsky, B. A. Schulman
Date :  27 Aug 12  (Deposition) - 14 Nov 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Ubiquitin-Like Protein Activation Enzyme, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Kaiser, K. Mao, A. M. Taherbhoy, S. Yu, J. L. Olszewski, D. M. Duda, I. Kurinov, A. Deng, T. D. Fenn, D. J. Klionsky, B. A. Schulman
Noncanonical E2 Recruitment By The Autophagy E1 Revealed By Atg7-Atg3 And Atg7-Atg10 Structures.
Nat. Struct. Mol. Biol. V. 19 1242 2012
PubMed-ID: 23142976  |  Reference-DOI: 10.1038/NSMB.2415

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME ATG7
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T1
    Expression System Strain: BL21(DE3) GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-289)
    Gene: APG7, ATG7, CVT2, YHR171W
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ATG12-ACTIVATING ENZYME E1 ATG7, AUTOPHAGY-RELATED PROTEIN 7, CYTOPLASM TO VACUOLE TARGETING PROTEIN 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2IPA6Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:-1 , SER A:0 , MET A:1 , GLU A:4 , HIS A:154 , ASP A:186 , THR A:253 , LYS A:280 , LEU A:281 , HOH A:490 , HOH A:495 , HOH A:500BINDING SITE FOR RESIDUE CIT A 301
2AC2SOFTWAREMET A:1 , VAL A:270 , SER A:271 , GLY A:272 , TRP A:273 , HOH A:526 , HOH A:593 , HOH A:654BINDING SITE FOR RESIDUE IPA A 302
3AC3SOFTWARELYS A:220 , LYS A:237 , LYS A:269 , SER A:271BINDING SITE FOR RESIDUE IPA A 303
4AC4SOFTWARELYS A:34 , GLN A:40 , HOH A:656BINDING SITE FOR RESIDUE IPA A 304
5AC5SOFTWAREASN A:276 , VAL A:277 , GLN A:278 , ARG A:284 , VAL A:285 , HOH A:641BINDING SITE FOR RESIDUE IPA A 305
6AC6SOFTWARESER A:149 , SER A:160 , ASP A:267 , MET A:268BINDING SITE FOR RESIDUE IPA A 306
7AC7SOFTWARESER A:37 , THR A:38 , CYS A:39 , PHE A:85 , HOH A:524BINDING SITE FOR RESIDUE IPA A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GSJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:147 -Pro A:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4GSJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee......eeeeehhhhhhhhhhhhh......eeeeeeeeee...........eeeeehhhhhh........eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..eeeeeeee....eeeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhhh....eeee.....eee.hhhhhhhhheeeee..........hhhhhhhhhhhhhh....eeeeeee......eeeeeeeee..........eeeee..........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gsj A  -1 GSMSSERVLSYAPAFASALATSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIDPQSSSPDMKVSGWERNVQGKLAPRVVDLS 289
                                     8        18        28        38        48        58        68   ||   79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259   ||  271       281        
                                                                                                    72|                                                                                                                                                                                          263|                       
                                                                                                     74                                                                                                                                                                                           266
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GSJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GSJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GSJ)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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    Arg A:147 - Pro A:148   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATG7_YEAST | P38862: 2li5 3rui 3ruj 3t7e 3t7f 3t7g 3t7h 3vh1 3vh2 3vh3 3vh4 4gsk 4gsl

(-) Related Entries Specified in the PDB File

4gsk 4gsl