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(-) Description

Title :  CRYSTAL STRUCTURE OF THIOREDOXIN DOMAIN OF THIOL-DISULFIDE OXIDOREDUCTASE BVU-2223 (TARGET EFI-501010) FROM BACTEROIDES VULGATUS
 
Authors :  Y. Patskovsky, P. Sampathkumar, R. Toro, R. Bhosle, W. D. Zencheck, B. H R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, H J. Hammonds, N. F. Al-Obaidi, M. Stead, J. Love, R. N. Armstrong, J. A. G S. C. Almo, Enzyme Function Initiative (Efi)
Date :  24 Aug 12  (Deposition) - 10 Oct 12  (Release) - 10 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Thioredoxin Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, P. Sampathkumar, R. Toro, R. Bhosle, W. D. Zencheck, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, B. Evans, S. Chowdhury, J. Hammonds, N. F. Al-Obaidi, M. Stead, J. Love, H. J. Imker, R. N. Armstrong, J. A. Gerlt, S. C. Almo
Structure Of Thioredoxin Domain Of Thiol-Disulfide Oxidoreductase Bvu-2223 From Bacteroides Vulgatus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOL-DISULFIDE OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: THIOREDOXIN DOMAIN RESIDUES 252-392
    Gene: BVU_2223
    Organism Scientific: BACTEROIDES VULGATUS
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2GSH1Ligand/IonGLUTATHIONE
3SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:264 , LEU A:265 , GLN A:338 , HOH A:666BINDING SITE FOR RESIDUE CL A 501
2AC2SOFTWAREHIS A:360 , ILE A:361 , GLU A:374 , ARG A:376 , HOH A:642BINDING SITE FOR RESIDUE CL A 502
3AC3SOFTWARESER A:250 , VAL A:356 , GLY A:357BINDING SITE FOR RESIDUE CL A 503
4AC4SOFTWARELYS A:278 , TYR A:303 , THR A:312 , ASN A:337 , HOH A:616 , HOH A:625 , HOH A:646BINDING SITE FOR RESIDUE SO4 A 504
5AC5SOFTWAREALA A:259 , ILE A:260 , LEU A:272 , ASN A:273 , HOH A:638 , HOH A:641BINDING SITE FOR RESIDUE CL A 505
6AC6SOFTWARESER A:255 , VAL A:256 , SER A:290BINDING SITE FOR RESIDUE CL A 506
7AC7SOFTWARESER A:250 , LEU A:251 , ALA A:252 , SER A:269 , ASP A:274 , GLU A:323 , LYS A:327 , GLU A:330 , CYS A:354 , LYS A:373 , HOH A:657 , HOH A:694 , HOH A:695BINDING SITE FOR RESIDUE GSH A 507

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:289 -A:292

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:358 -Pro A:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GRF)

(-) Exons   (0, 0)

(no "Exon" information available for 4GRF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4grfa_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhh...eeee.hhhhhhhhhhhh......eeeee.....eee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grf A 250 SLATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 389
                                   259       269       279       289       299       309       319       329       339       349       359       369       379       389
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRF)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

2lrn NMR STRUCTURE RELATED ID: EFI-501010 RELATED DB: TARGETTRACK