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(-) Description

Title :  N-TERMINAL DOMAIN OF C. ELEGANS HSP90
 
Authors :  J. Osipiuk, G. Chhor, M. Gu, P. Van Oosten-Hawle, R. I. Morimoto, A. Joa Midwest Center For Structural Genomics (Mcsg)
Date :  23 Aug 12  (Deposition) - 05 Sep 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Apc102132, Hsp90, Chaperone, Adp, Psi-Biology, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, G. Chhor, M. Gu, P. Van Oosten-Hawle, R. I. Morimoto, A. Joachimiak
N-Terminal Domain Of C. Elegans Hsp90
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 90
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN
    Gene: C47E8.5, DAF-21
    Organism Common: NEMATODE
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Synonym: ABNORMAL DAUER FORMATION PROTEIN 21

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2ZN10Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:39 , ALA A:43 , ASP A:81 , MET A:86 , ASN A:94 , LEU A:95 , GLY A:123 , VAL A:124 , GLY A:125 , PHE A:126 , THR A:172 , ZN A:501 , HOH A:601 , HOH A:604 , HOH A:607 , HOH A:608 , HOH A:632 , HOH A:633 , HOH A:634 , HOH A:644 , HOH A:648BINDING SITE FOR RESIDUE ADP A 500
02AC2SOFTWAREASN A:39 , ADP A:500 , HOH A:632 , HOH A:633 , HOH A:634BINDING SITE FOR RESIDUE ZN A 501
03AC3SOFTWAREHIS A:177 , HOH A:629 , HOH A:654 , GLU B:74BINDING SITE FOR RESIDUE ZN A 502
04AC4SOFTWAREGLU A:30 , HIS A:198 , HOH A:660 , HOH A:661BINDING SITE FOR RESIDUE ZN A 503
05AC5SOFTWAREASP A:144 , HOH A:649 , HOH A:671 , HOH A:692BINDING SITE FOR RESIDUE ZN A 504
06AC6SOFTWAREASP A:145 , HOH A:689 , HOH A:690 , HOH A:693 , HOH A:694BINDING SITE FOR RESIDUE ZN A 505
07AC7SOFTWAREARG A:189 , GLU A:193 , HOH A:626 , HOH A:652 , ASP B:144BINDING SITE FOR RESIDUE ZN A 506
08AC8SOFTWAREASP A:184 , HOH A:650 , HOH A:651 , HOH A:691 , ASP B:145BINDING SITE FOR RESIDUE ZN A 507
09AC9SOFTWAREASN B:39 , ALA B:43 , ASP B:81 , MET B:86 , LEU B:95 , GLY B:123 , VAL B:124 , GLY B:125 , PHE B:126 , THR B:172 , ZN B:501 , HOH B:601 , HOH B:603 , HOH B:609 , HOH B:644 , HOH B:645 , HOH B:646 , HOH B:647 , HOH B:674BINDING SITE FOR RESIDUE ADP B 500
10BC1SOFTWAREASN B:39 , ADP B:500 , HOH B:645 , HOH B:646 , HOH B:647BINDING SITE FOR RESIDUE ZN B 501
11BC2SOFTWAREGLU A:74 , HIS B:177 , HOH B:627 , HOH B:634BINDING SITE FOR RESIDUE ZN B 502
12BC3SOFTWAREGLU A:54 , GLU B:30 , HIS B:198 , HOH B:631 , HOH B:642BINDING SITE FOR RESIDUE ZN B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GQT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GQT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GQT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GQT)

(-) Exons   (0, 0)

(no "Exon" information available for 4GQT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains d4gqta_ A: automated matches                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee.....hhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqt A   3 ENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVADKVVVTSKNNDDDSYQWESSAGGSFVVRPFNDPEVTRGTKIVMHIKEDQIDFLEERKIKEIVKKHSQFIGYPIKLVVE 211
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202         


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains d4gqtb_ B: automated matches                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee....eeeeee.....hhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gqt B   3 ENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVADKVVVTSKNNDDDSYQWESSAGGSFVVRPFNDPEVTRGTKIVMHIKEDQIDFLEERKIKEIVKKHSQFIGYPIKLVVE 211
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GQT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GQT)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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        HSP90_CAEEL | Q18688: 4i2z

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