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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE A3MSH1 (TARGET EFI-501992) FROM PYROBACULUM CALIDIFONTIS COMPLEXED WITH DMAPP
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H C. D. Poulter, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (
Date :  20 Aug 12  (Deposition) - 29 Aug 12  (Release) - 29 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Isoprenoid Synthesis, Isoprenoid Diphosphate Synthase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdury, B. Evans, J. Hammonds, W. D. Zencheck, H. J. Imker, C. D. Poulter, J. A. Gerlt, S. C. Almo
Crystal Structure Of Isoprenoid Synthase From Pyrobaculum Calidifontis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POLYPRENYL SYNTHETASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PCAL_0150
    Organism Scientific: PYROBACULUM CALIDIFONTIS
    Organism Taxid: 410359
    Strain: JCM 11548/VA1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DMA1Ligand/IonDIMETHYLALLYL DIPHOSPHATE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2DMA2Ligand/IonDIMETHYLALLYL DIPHOSPHATE
3PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:63 , TRP A:64 , ARG A:65BINDING SITE FOR RESIDUE CL A 401
2AC2SOFTWAREGLY A:45 , LYS A:46 , LEU A:48 , ARG A:49 , HIS A:78 , ARG A:95 , PHE A:221 , HOH A:517 , HOH A:518 , HOH A:566 , HOH A:573 , HOH A:768BINDING SITE FOR RESIDUE DMA A 402
3AC3SOFTWAREGLU A:139 , LYS A:194 , ARG A:204 , GLU A:208 , TRP A:211 , HOH A:792BINDING SITE FOR RESIDUE PG4 A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GP1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GP1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GP1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GP1)

(-) Exons   (0, 0)

(no "Exon" information available for 4GP1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gp1 A   3 MDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNGTLKELLDFIVAREYAENL 340
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232|      249       259       269       279       289       299       309       319       329       339 
                                                                                                                                                                                                                                                               232|                                                                                                    
                                                                                                                                                                                                                                                                240
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GP1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GP1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GP1)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A3MSH1_PYRCJ | A3MSH1: 4dhd 4gp2

(-) Related Entries Specified in the PDB File

4dhd UN-LIGANDED STRUCTURE
4gp2 COMPLEX WITH DMAPP AND MAGNESIUM RELATED ID: EFI-501992 RELATED DB: TARGETTRACK