4GNI - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF THE SSZ1 ATPASE BOUND TO ATP AND MAGNESIUM

Authors :   G. Bange, I. Sinning

Date :   17 Aug 12 (Deposition) - 05 Dec 12 (Release) - 16 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Hsp70-Type Atpase, Atp Binding Protein, Magnesium Binding, Co- Translational Chaperone, Ribosome-Associated Complex, Rac, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Leidig, G. Bange, J. Kopp, S. Amlacher, A. Aravind, S. Wickles, G. Witte, E. Hurt, R. Beckmann, I. Sinning
Structural Characterization Of A Eukaryotic Chaperone-The Ribosome-Associated Complex.
Nat. Struct. Mol. Biol. V. 20 23 2013
PubMed-ID: 23202586 | Reference-DOI: 10.1038/NSMB.2447

Molecule 1 - PUTATIVE HEAT SHOCK PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET24D
	Expression System Strain	:	BL21 (DE3) ROSETTA 2
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CTHT_0008010
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
	Organism Taxid	:	759272
	Strain	:	DSM 1495 / CBS 144.50 / IMI 039719

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ATP A:502 , HOH A:601 , HOH A:603 , HOH A:604 , HOH A:610 , HOH A:612	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	GLY A:21 , ASN A:22 , SER A:23 , ASN A:24 , GLY A:213 , GLY A:214 , SER A:215 , ARG A:216 , GLY A:242 , GLU A:282 , LYS A:285 , ARG A:286 , SER A:289 , GLY A:352 , GLY A:353 , THR A:354 , ASN A:356 , THR A:357 , MG A:501 , HOH A:601 , HOH A:603 , HOH A:604 , HOH A:613 , HOH A:616 , HOH A:621 , HOH A:647 , HOH A:648 , HOH A:678	BINDING SITE FOR RESIDUE ATP A 502
3	AC3	SOFTWARE	ATP B:502 , HOH B:603 , HOH B:605 , HOH B:607 , HOH B:612 , HOH B:628	BINDING SITE FOR RESIDUE MG B 501
4	AC4	SOFTWARE	GLY B:21 , ASN B:22 , SER B:23 , ASN B:24 , GLY B:213 , GLY B:214 , SER B:215 , ARG B:216 , GLY B:242 , GLU B:282 , LYS B:285 , ARG B:286 , SER B:289 , GLY B:352 , GLY B:353 , THR B:354 , ASN B:356 , THR B:357 , MG B:501 , HOH B:603 , HOH B:605 , HOH B:607 , HOH B:610 , HOH B:616 , HOH B:677 , HOH B:699 , HOH B:727	BINDING SITE FOR RESIDUE ATP B 502

(no "SS Bond" information available for 4GNI)

Asymmetric Unit

No.	Residues
1	Glu A:117	-	Glu A:118

(no "SAP(SNP)/Variant" information available for 4GNI)

(no "PROSITE Motif" information available for 4GNI)

(no "Exon" information available for 4GNI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gnia1 A:13-196 automated matches                                                                                                                                                      d4gnia2 A:203-403 automated matches                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeeeee..eeeee........ee.eeeee..eeeehhhhhhh...hhh.eee.hhhhh..hhhhh.hhhhh.....eee..eeeeee..........eeeehhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gni A  13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDASDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   ||  208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398     
                                                                                                                                                                                                                 196|                                                                                                                                                                                                        
                                                                                                                                                                                                                  203

Chain B from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gnib1 B:12-195 automated matches                                                                                                                                                      d4gnib2 B:203-402 automated matches                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee...eeeeeeee..eeeee........ee..eeee..eeeehhhhhh....hhh.ee..hhhhh..hhhhh.hhhhh.....eee..eeeeee..........eeeehhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhh..eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh....eee............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gni B  12 ERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYDSDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQ 402
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191   ||  208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398    
                                                                                                                                                                                                                 195|                                                                                                                                                                                                       
                                                                                                                                                                                                                  203

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: automated matches (111)

Protein domain: automated matches (111)

Chaetomium thermophilum [TaxId: 759272] (1)

1a	d4gnia1	A:13-196
1b	d4gnia2	A:203-403
1c	d4gnib1	B:12-195
1d	d4gnib2	B:203-402

(no "CATH Domain" information available for 4GNI)

(no "Pfam Domain" information available for 4GNI)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:117 - Glu A:118	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	4gni
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	G0RZX9_CHATD \| G0RZX9
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	G0RZX9_CHATD \| G0RZX9	:	5mb9

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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