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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COILED-COIL, RA AND PH DOMAINS OF LAMELLIPODIN
 
Authors :  Y. C. E. Chang, J. Wu
Date :  16 Aug 12  (Deposition) - 28 Nov 12  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ra-Ph, Coiled-Coil Region, Ras-Association Domain, Pleckstrin Homology Domain, Cytoskeletal Protein, Ena/Vasp Binding, Cell Migration, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. C. Chang, H. Zhang, M. L. Brennan, J. Wu
Crystal Structure Of Lamellipodin Implicates Diverse Functions In Actin Polymerization And Ras Signaling.
Protein Cell V. 4 211 2013
PubMed-ID: 23483482  |  Reference-DOI: 10.1007/S13238-013-2082-5

(-) Compounds

Molecule 1 - RAS-ASSOCIATED AND PLECKSTRIN HOMOLOGY DOMAINS-CONTAINING PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: COILED-COIL, RA, PH DOMAIN (UNP RESIDUES 240-520)
    Gene: RAPH1, ALS2CR18, ALS2CR9, KIAA1681, LPD, PREL2, RMO1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RAPH1, AMYOTROPHIC LATERAL SCLEROSIS 2 CHROMOSOMAL REGION CANDIDATE GENE 18 PROTEIN, AMYOTROPHIC LATERAL SCLEROSIS 2 CHROMOSOMAL REGION CANDIDATE GENE 9 PROTEIN, LAMELLIPODIN, PROLINE- RICH EVH1 LIGAND 2, PREL-2, PROTEIN RMO1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GMV)

(-) Sites  (0, 0)

(no "Site" information available for 4GMV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GMV)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1His A:305 -Cys A:306
2Lys B:303 -Ser B:304
3His B:305 -Cys B:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GMV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GMV)

(-) Exons   (0, 0)

(no "Exon" information available for 4GMV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....eeeeeeee....eeeeeee...hhhhhhhhhhhhh........eeeeeehhh.eeee.....hhhhhhh........eeeee.hhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.........eeeeeee......eeeeeeee....eee...eeeehhhhheeeee.hhhhhh......eeeee...........eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gmv A 252 KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQLYMNYQEALKRT 520
                                   261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421      |440       450       460       470       480       490       500       510       520
                                                                                                                                                                                                          428|                                                                                  
                                                                                                                                                                                                           438                                                                                  


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.eeeeeeee....eeeeeee...hhhhhhhhhhhh........eeeeeee....eeee.....hhhhhhh........eeeeee.hhhhhhhhhhhhh..........hhhhhhhhhhhhhh.........eeeeeee......eeeeeeee...eeeee...eeeee.hhheeeee.hhhhhh......eeeee...........eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gmv B 252 KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYGKQLYMNYQEALKRT 520
                                   261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       439       449       459       469       479       489       499       509       519 
                                                                                                                                                                                                           429|                                                                                  
                                                                                                                                                                                                            438
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GMV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GMV)

(-) Gene Ontology  (11, 11)

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  Cis Peptide Bonds
    His A:305 - Cys A:306   [ RasMol ]  
    His B:305 - Cys B:306   [ RasMol ]  
    Lys B:303 - Ser B:304   [ RasMol ]  
 
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  RAPH1_HUMAN | Q70E73
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAPH1_HUMAN | Q70E73: 4gn1

(-) Related Entries Specified in the PDB File

4gn1 THE SAME PROTEIN BUT ONLY ENCOMPASS RA AND PH DOMAINS