4GLT - JenaLib

Title :   CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE MFLA_2116 (TARGET EFI-507160) FROM METHYLOBACILLUS FLAGELLATUS KT WITH GSH BOUND

Authors :   Y. Patskovsky, R. Toro, R. Bhosle, W. D. Zencheck, B. Hillerich, R. D. Se E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H R. N. Armstrong, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative

Date :   14 Aug 12 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Transferase-Like Protein, Transferase, Structural Genomics, Enzyme Function Initiative, Efi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Patskovsky, R. Toro, R. Bhosle, W. D. Zencheck, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, R. N. Armstrong, J. A. Gerlt, S. C. Almo
Crystal Structure Of Glutathione S-Transferase Mfla_2116 (Target Efi-507160) From Methylobacillus Flagellatus Kt Wit Gsh Bound
To Be Published
PubMed: search

Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE-LIKE PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Gene	:	MFLA_2116
	Organism Common	:	BACTERIA
	Organism Scientific	:	METHYLOBACILLUS FLAGELLATUS
	Organism Taxid	:	265072
	Strain	:	KT

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	GSH	4	Ligand/Ion	GLUTATHIONE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:8 , SER A:9 , PRO A:10 , TYR A:11 , LEU A:33 , LYS A:48 , ILE A:49 , PRO A:50 , ASP A:62 , SER A:63 , TYR A:165 , ARG A:169	BINDING SITE FOR RESIDUE GSH A 301
2	AC2	SOFTWARE	LYS A:125 , LYS A:129 , SER B:9 , TYR B:11 , LYS B:48 , ILE B:49 , PRO B:50 , ASP B:62 , SER B:63 , HOH B:403	BINDING SITE FOR RESIDUE GSH B 301
3	AC3	SOFTWARE	SER C:9 , TYR C:11 , GLY C:47 , LYS C:48 , ILE C:49 , PRO C:50 , ASP C:62 , SER C:63 , HOH C:401 , HOH C:415 , HOH C:417 , LYS D:129	BINDING SITE FOR RESIDUE GSH C 301
4	AC4	SOFTWARE	LYS C:125 , LYS C:129 , SER D:9 , GLY D:47 , LYS D:48 , ILE D:49 , PRO D:50 , ASP D:62 , SER D:63 , HOH D:406 , HOH D:407 , HOH D:417 , HOH D:418	BINDING SITE FOR RESIDUE GSH D 301

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Asymmetric Unit

No.	Residues
1	Ile A:49	-	Pro A:50
2	Tyr A:61	-	Asp A:62
3	Cys B:38	-	Pro B:39
4	Ile B:49	-	Pro B:50
5	Tyr B:61	-	Asp B:62
6	Ile C:49	-	Pro C:50
7	Tyr C:61	-	Asp C:62
8	Ile D:49	-	Pro D:50
9	Tyr D:61	-	Asp D:62

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...hhhhhhhhhhhhhhh...eeee........hhhhh.......eee.....ee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glt A  -5 NLYFQSMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLADIAVGCMLGYLELRYQHLDWKQQYPNLARHYAAMMKRASFKDTAPVI 202
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194

Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhhhhhhhhh....eeee........hhhhhh......eee.....ee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glt B   0 SMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLADIAVGCMLGYLELRYQHLDWKQQYPNLARHYAAMMKRASFKDTAPVI 202
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee........hhhhhh......eee.....ee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glt C   0 SMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLADIAVGCMLGYLELRYQHLDWKQQYPNLARHYAAMMKRASFKDTAPV 201
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199

Chain D from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...hhhhhhhhhhhhhh....eeee........hhhhhh......eee.....ee.hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glt D  -5 NLYFQSMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQDHTAKIAVRRWEALADGVTDAAVAAVMEGRRPEGMQDSAVIEKQLNKVERGLRRMDQDLEKRKWCVNESFSLADIAVGCMLGYLELRYQHLDWKQQYPNLARHYAAMMKRASFKDTAPVI 202
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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	Cis Peptide Bonds
		Cys B:38 - Pro B:39	[ RasMol ]
		Ile A:49 - Pro A:50	[ RasMol ]
		Ile B:49 - Pro B:50	[ RasMol ]
		Ile C:49 - Pro C:50	[ RasMol ]
		Ile D:49 - Pro D:50	[ RasMol ]
		Tyr A:61 - Asp A:62	[ RasMol ]
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Description