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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, WITH SUBSTRATE KANAMYCIN AND SMALL MOLECULE INHIBITOR 1-NM-PP1
 
Authors :  P. J. Stogios, E. Evdokimova, Z. Wawrzak, G. Minasov, O. Egorova, R. Di T. Shakya, P. Spanogiannopoulos, N. Todorovic, A. Capretta, G. D. Wri A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  11 Aug 12  (Deposition) - 05 Sep 12  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  A,B  (1x)
Biol. Unit 14:  C,D  (1x)
Biol. Unit 15:  E,F  (1x)
Biol. Unit 16:  G,H  (1x)
Biol. Unit 17:  I,J  (1x)
Biol. Unit 18:  K,L  (1x)
Keywords :  Pyrazolopyrimidine, 1-Nm-Pp1, Bumped Kinase Inhibitor, Bki, Protein Kinase Inhibitor, Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Transferase-Transferase Inhibitor Complex, Eukaryotic Protein Kinase-Like Fold, Alpha/Beta Protein, Transferase, Phosphotransferase, Aminoglycoside Phosphotransferase, Antibiotic Resistance, Aminoglycosides, Kanamycin, Gtp, Intracellular (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, P. Spanogiannopoulos, E. Evdokimova, O. Egorova, T. Shakya, N. Todorovic, A. Capretta, G. D. Wright, A. Savchenko
Structure-Guided Optimization Of Protein Kinase Inhibitors Reverses Aminoglycoside Antibiotic Resistance.
Biochem. J. V. 454 191 2013
PubMed-ID: 23758273  |  Reference-DOI: 10.1042/BJ20130317

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE APHA1-IAB
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 2.7.1.95
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ABAYE3578, APHA1-IAB
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 509173
    Strain: AYE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A           
Biological Unit 2 (1x):  B          
Biological Unit 3 (1x):   C         
Biological Unit 4 (1x):    D        
Biological Unit 5 (1x):     E       
Biological Unit 6 (1x):      F      
Biological Unit 7 (1x):       G     
Biological Unit 8 (1x):        H    
Biological Unit 9 (1x):         I   
Biological Unit 10 (1x):          J  
Biological Unit 11 (1x):           K 
Biological Unit 12 (1x):            L
Biological Unit 13 (1x): AB          
Biological Unit 14 (1x):   CD        
Biological Unit 15 (1x):     EF      
Biological Unit 16 (1x):       GH    
Biological Unit 17 (1x):         IJ  
Biological Unit 18 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 150)

Asymmetric Unit (7, 150)
No.NameCountTypeFull Name
10JN12Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT28Ligand/IonACETATE ION
3CL1Ligand/IonCHLORIDE ION
4KAN12Ligand/IonKANAMYCIN A
5MSE77Mod. Amino AcidSELENOMETHIONINE
6NA14Ligand/IonSODIUM ION
7PEG6Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (5, 13)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT3Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE7Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (5, 10)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (4, 13)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT4Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE7Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (4, 10)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT2Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 5 (4, 13)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT5Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 6 (4, 9)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 7 (4, 11)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT2Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE7Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 8 (4, 11)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT3Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 9 (5, 10)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 10 (5, 14)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT2Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE7Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 11 (4, 10)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT1Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE7Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 12 (4, 11)
No.NameCountTypeFull Name
10JN1Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT3Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN1Ligand/IonKANAMYCIN A
5MSE6Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 13 (5, 23)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT4Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE13Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 14 (4, 23)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT6Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE13Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 15 (4, 22)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT6Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE12Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 16 (4, 22)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT5Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE13Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 17 (5, 24)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT3Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE13Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 18 (4, 21)
No.NameCountTypeFull Name
10JN2Ligand/Ion1-TERT-BUTYL-3-(NAPHTHALEN-1-YLMETHYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE
2ACT4Ligand/IonACETATE ION
3CL-1Ligand/IonCHLORIDE ION
4KAN2Ligand/IonKANAMYCIN A
5MSE13Mod. Amino AcidSELENOMETHIONINE
6NA-1Ligand/IonSODIUM ION
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (73, 73)

Asymmetric Unit (73, 73)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:165 , ASP A:167 , ASP A:198 , ASN A:234 , CYS A:235 , GLU A:238 , ASP A:268 , GLU A:269 , PHE A:271 , HOH A:402 , HOH A:408 , HOH A:412 , HOH A:416 , HOH A:446 , HOH A:447 , HOH A:463 , HOH A:470 , HOH A:488 , HOH A:581 , HOH A:587 , HOH A:591 , HOH A:605 , GLY H:252BINDING SITE FOR RESIDUE KAN A 301
02AC2SOFTWAREASP A:31 , PHE A:53 , ALA A:100 , ILE A:101 , ILE A:215 , HOH A:476BINDING SITE FOR RESIDUE 0JN A 302
03AC3SOFTWARETHR A:76 , MSE A:79 , ACT A:307 , HOH A:569 , HOH A:659BINDING SITE FOR RESIDUE NA A 303
04AC4SOFTWAREASN A:234 , HOH A:402 , HOH A:424 , HOH A:445 , HOH A:458BINDING SITE FOR RESIDUE NA A 304
05AC5SOFTWARESER A:242 , LYS A:245 , HOH L:540BINDING SITE FOR RESIDUE CL A 305
06AC6SOFTWAREGLY A:37 , ALA A:38 , THR A:39 , HIS A:56 , GLY A:57 , LYS A:58 , HOH A:594BINDING SITE FOR RESIDUE ACT A 306
07AC7SOFTWARETHR A:76 , ALA A:77 , MSE A:79 , NA A:303 , HOH A:654BINDING SITE FOR RESIDUE ACT A 307
08AC8SOFTWAREVAL A:109BINDING SITE FOR RESIDUE ACT A 308
09AC9SOFTWAREARG A:129 , SER A:133 , TYR A:251 , HOH A:544 , HOH A:628BINDING SITE FOR RESIDUE PEG A 309
10BC1SOFTWARESER A:2 , HIS A:3 , HOH A:456 , GLN B:35 , ASP B:165 , PHE B:166 , ASP B:167 , ASP B:198 , ARG B:219 , ASN B:234 , CYS B:235 , ASP B:268 , GLU B:269 , PHE B:271 , HOH B:406 , HOH B:413 , HOH B:415 , HOH B:433 , HOH B:439 , HOH B:444 , HOH B:518 , HOH B:550 , HOH B:606 , HOH B:671 , ARG C:6BINDING SITE FOR RESIDUE KAN B 301
11BC2SOFTWAREGLN A:5 , ASP B:31 , ILE B:40 , PHE B:53 , ALA B:100 , ILE B:101 , GLY B:103 , ILE B:215 , ASP B:216 , HOH B:425BINDING SITE FOR RESIDUE 0JN B 302
12BC3SOFTWAREVAL B:109 , TYR B:113 , SER B:116 , GLY B:209 , HOH B:437BINDING SITE FOR RESIDUE ACT B 303
13BC4SOFTWAREARG B:129 , HIS B:132 , SER B:133 , ARG B:225 , TYR B:251BINDING SITE FOR RESIDUE PEG B 304
14BC5SOFTWAREASP C:165 , ASP C:167 , ASP C:198 , ASN C:234 , CYS C:235 , GLU C:238 , ASP C:268 , GLU C:269 , PHE C:271 , HOH C:403 , HOH C:408 , HOH C:415 , HOH C:443 , HOH C:446 , HOH C:460 , HOH C:463 , HOH C:508 , HOH C:538 , HOH C:596 , HOH C:620 , GLY L:252 , HOH L:524BINDING SITE FOR RESIDUE KAN C 301
15BC6SOFTWAREPHE C:53 , ALA C:100 , ILE C:101 , GLY C:103 , ILE C:215 , HOH C:516BINDING SITE FOR RESIDUE 0JN C 302
16BC7SOFTWARETHR C:76 , MSE C:79 , ACT C:308 , HOH C:537 , HOH C:563BINDING SITE FOR RESIDUE NA C 303
17BC8SOFTWAREASN C:234 , HOH C:466 , HOH C:469 , HOH C:525 , HOH L:524BINDING SITE FOR RESIDUE NA C 304
18BC9SOFTWAREVAL C:109 , TYR C:113 , ILE C:120 , HOH C:580BINDING SITE FOR RESIDUE ACT C 305
19CC1SOFTWARETRP C:233 , GLN C:262 , HOH C:437BINDING SITE FOR RESIDUE ACT C 306
20CC2SOFTWARELYS C:184 , LEU C:185 , LEU C:186 , PRO C:187 , ASN C:259BINDING SITE FOR RESIDUE ACT C 307
21CC3SOFTWARETHR C:76 , MSE C:79 , PRO C:80 , ARG C:130 , NA C:303BINDING SITE FOR RESIDUE ACT C 308
22CC4SOFTWARESER C:2 , HIS C:3 , HOH C:600 , ASP D:165 , ASP D:167 , ASP D:198 , ASN D:234 , CYS D:235 , GLU D:238 , ASP D:268 , GLU D:269 , PHE D:271 , HOH D:418 , HOH D:420 , HOH D:430 , HOH D:432 , HOH D:439 , HOH D:446 , HOH D:492 , HOH D:510 , HOH D:550 , HOH D:563BINDING SITE FOR RESIDUE KAN D 301
23CC5SOFTWAREGLN C:5 , ASP D:31 , ILE D:40 , PHE D:53 , ILE D:101 , GLY D:103 , ILE D:215 , HOH D:412BINDING SITE FOR RESIDUE 0JN D 302
24CC6SOFTWARETHR D:76 , MSE D:79 , ACT D:304 , HOH D:507 , HOH D:526BINDING SITE FOR RESIDUE NA D 303
25CC7SOFTWARETHR D:76 , ALA D:77 , PHE D:78 , MSE D:79 , PRO D:80 , NA D:303BINDING SITE FOR RESIDUE ACT D 304
26CC8SOFTWARETYR D:113 , SER D:116 , HOH D:585 , HOH D:665BINDING SITE FOR RESIDUE ACT D 305
27CC9SOFTWAREGLN E:35 , ASP E:165 , PHE E:166 , ASP E:167 , ASP E:198 , ARG E:219 , ASN E:234 , CYS E:235 , GLU E:238 , ASP E:268 , GLU E:269 , PHE E:271 , HOH E:413 , HOH E:428 , HOH E:431 , HOH E:433 , HOH E:452 , HOH E:482 , HOH E:514 , HOH E:542 , HOH E:604 , HOH E:627 , HOH E:660BINDING SITE FOR RESIDUE KAN E 301
28DC1SOFTWAREASP E:31 , ILE E:40 , PHE E:53 , ALA E:100 , ILE E:101 , GLY E:103 , ILE E:205 , ILE E:215 , HOH E:408 , HOH E:444 , HOH E:558 , GLU F:7BINDING SITE FOR RESIDUE 0JN E 302
29DC2SOFTWARETHR E:76 , MSE E:79 , ACT E:307 , HOH E:467 , HOH E:520BINDING SITE FOR RESIDUE NA E 303
30DC3SOFTWAREASP E:168 , GLU E:169 , ASN E:171BINDING SITE FOR RESIDUE ACT E 304
31DC4SOFTWAREGLU E:169 , TRP E:233 , MSE E:258 , LEU E:261 , GLN E:262 , LEU E:265BINDING SITE FOR RESIDUE ACT E 305
32DC5SOFTWAREPHE D:239 , ARG E:30 , THR E:39BINDING SITE FOR RESIDUE ACT E 306
33DC6SOFTWARETHR E:76 , ALA E:77 , PHE E:78 , MSE E:79 , PRO E:80 , NA E:303BINDING SITE FOR RESIDUE ACT E 307
34DC7SOFTWAREVAL E:109 , SER E:116 , GLY E:209 , HOH E:459BINDING SITE FOR RESIDUE ACT E 308
35DC8SOFTWAREASP F:165 , PHE F:166 , ASP F:167 , ASP F:198 , ARG F:219 , ASN F:234 , CYS F:235 , GLU F:238 , ASP F:268 , GLU F:269 , PHE F:271 , HOH F:411 , HOH F:415 , HOH F:421 , HOH F:423 , HOH F:431 , HOH F:434 , HOH F:471 , HOH F:473 , HOH F:532 , HOH F:612BINDING SITE FOR RESIDUE KAN F 301
36DC9SOFTWAREARG E:6 , ASP F:31 , PHE F:53 , ALA F:100 , ILE F:101 , GLY F:103 , ILE F:215 , HOH F:460BINDING SITE FOR RESIDUE 0JN F 302
37EC1SOFTWARETHR F:76 , MSE F:79 , HOH F:600 , HOH F:641BINDING SITE FOR RESIDUE NA F 303
38EC2SOFTWAREGLY F:37 , THR F:39 , HIS F:56 , GLY F:57 , LYS F:58 , VAL F:61BINDING SITE FOR RESIDUE ACT F 304
39EC3SOFTWAREGLY E:252 , ASP E:254 , HOH E:533 , ASP G:165 , ASP G:167 , ASP G:198 , ASN G:234 , CYS G:235 , GLU G:238 , ASP G:268 , GLU G:269 , PHE G:271 , HOH G:402 , HOH G:406 , HOH G:413 , HOH G:423 , HOH G:434 , HOH G:465 , HOH G:481 , HOH G:490 , HOH G:492 , HOH G:523 , HOH G:587 , HOH G:599BINDING SITE FOR RESIDUE KAN G 301
40EC4SOFTWAREASP G:31 , ARG G:42 , PHE G:53 , ILE G:101 , HOH G:581 , HOH G:621 , HOH G:622 , HOH G:642BINDING SITE FOR RESIDUE 0JN G 302
41EC5SOFTWARETHR G:76 , MSE G:79 , HOH G:529 , HOH G:541 , HOH G:708BINDING SITE FOR RESIDUE NA G 303
42EC6SOFTWAREASP E:254 , HOH E:533 , ASN G:234 , HOH G:426 , HOH G:516 , HOH G:530BINDING SITE FOR RESIDUE NA G 304
43EC7SOFTWARETRP G:233 , GLN G:262 , LEU G:265 , HOH G:598BINDING SITE FOR RESIDUE ACT G 305
44EC8SOFTWARETYR G:113 , HOH G:509BINDING SITE FOR RESIDUE ACT G 306
45EC9SOFTWARESER G:2 , HIS G:3 , ASP H:165 , PHE H:166 , ASP H:167 , ASP H:198 , ASN H:234 , CYS H:235 , GLU H:238 , ASP H:268 , GLU H:269 , PHE H:271 , HOH H:411 , HOH H:438 , HOH H:449 , HOH H:458 , HOH H:459 , HOH H:473 , HOH H:477 , HOH H:508 , HOH H:517 , HOH H:560 , HOH H:598BINDING SITE FOR RESIDUE KAN H 301
46FC1SOFTWAREGLN G:5 , ASP H:31 , ILE H:40 , PHE H:53 , ALA H:100 , ILE H:101 , GLY H:103 , ILE H:215 , ASP H:216 , HOH H:410BINDING SITE FOR RESIDUE 0JN H 302
47FC2SOFTWARETHR H:76 , MSE H:79 , ACT H:304 , HOH H:521 , HOH H:628BINDING SITE FOR RESIDUE NA H 303
48FC3SOFTWARETHR H:76 , ALA H:77 , MSE H:79 , PRO H:80 , NA H:303BINDING SITE FOR RESIDUE ACT H 304
49FC4SOFTWARETRP H:233 , MSE H:258 , GLN H:262 , HOH H:660BINDING SITE FOR RESIDUE ACT H 305
50FC5SOFTWAREVAL H:109 , SER H:116 , HOH H:485BINDING SITE FOR RESIDUE ACT H 306
51FC6SOFTWAREARG G:6 , HOH G:466 , HOH G:571 , GLN I:35 , ASP I:165 , ASP I:167 , ASP I:198 , ARG I:219 , ASN I:234 , CYS I:235 , ASP I:268 , GLU I:269 , PHE I:271 , HOH I:418 , HOH I:428 , HOH I:431 , HOH I:432 , HOH I:459 , HOH I:476 , HOH I:484 , HOH I:500 , HOH I:534 , HOH I:570 , HOH I:622 , SER J:2 , HIS J:3BINDING SITE FOR RESIDUE KAN I 301
52FC7SOFTWAREASP I:31 , ILE I:40 , PHE I:53 , THR I:99 , ALA I:100 , ILE I:101 , GLY I:103 , ILE I:215 , GLN J:5BINDING SITE FOR RESIDUE 0JN I 302
53FC8SOFTWAREVAL I:109 , GLY I:209 , PRO K:241BINDING SITE FOR RESIDUE ACT I 303
54FC9SOFTWAREARG I:129 , SER I:133 , ARG I:225 , TYR I:251 , HOH I:482BINDING SITE FOR RESIDUE PEG I 304
55GC1SOFTWAREGLY D:252 , ASP D:254 , ASP J:165 , ASP J:167 , ASP J:198 , ASN J:234 , CYS J:235 , GLU J:238 , ASP J:268 , GLU J:269 , PHE J:271 , HOH J:405 , HOH J:410 , HOH J:432 , HOH J:445 , HOH J:469 , HOH J:475 , HOH J:510 , HOH J:594 , HOH J:603 , HOH J:608BINDING SITE FOR RESIDUE KAN J 301
56GC2SOFTWAREASP J:31 , ILE J:40 , PHE J:53 , LYS J:55 , ALA J:100 , ILE J:101 , GLY J:103 , THR J:105 , ILE J:205 , ILE J:215 , HOH J:451 , HOH J:684BINDING SITE FOR RESIDUE 0JN J 302
57GC3SOFTWARETHR J:76 , MSE J:79 , ACT J:306 , HOH J:459 , HOH J:683BINDING SITE FOR RESIDUE NA J 303
58GC4SOFTWAREASN J:234 , HOH J:410 , HOH J:425 , HOH J:428 , HOH J:461BINDING SITE FOR RESIDUE NA J 304
59GC5SOFTWAREVAL J:109 , TYR J:113 , SER J:116BINDING SITE FOR RESIDUE ACT J 305
60GC6SOFTWAREMSE J:79 , PRO J:80 , NA J:303BINDING SITE FOR RESIDUE ACT J 306
61GC7SOFTWAREGLY J:37 , THR J:39 , HIS J:56 , LYS J:58 , VAL J:61BINDING SITE FOR RESIDUE PEG J 307
62GC8SOFTWAREARG J:129 , SER J:133 , GLY J:252BINDING SITE FOR RESIDUE PEG J 308
63GC9SOFTWAREGLN C:153 , ASN J:158 , HOH J:601 , HOH J:663BINDING SITE FOR RESIDUE PEG J 309
64HC1SOFTWAREGLN K:35 , ASP K:165 , ASP K:167 , ASP K:198 , ARG K:219 , ASN K:234 , CYS K:235 , GLU K:238 , ASP K:268 , GLU K:269 , PHE K:271 , HOH K:402 , HOH K:412 , HOH K:424 , HOH K:432 , HOH K:447 , HOH K:509 , HOH K:519 , HOH K:524 , HOH K:539BINDING SITE FOR RESIDUE KAN K 301
65HC2SOFTWAREASP K:31 , PHE K:53 , THR K:99 , ALA K:100 , ILE K:101 , GLY K:103 , ILE K:215 , ASP K:216 , HOH K:586BINDING SITE FOR RESIDUE 0JN K 302
66HC3SOFTWARETHR K:76 , MSE K:79 , HOH K:502 , HOH K:597BINDING SITE FOR RESIDUE NA K 303
67HC4SOFTWAREGLY K:37 , ALA K:38 , THR K:39 , HIS K:56 , LYS K:58 , VAL K:61BINDING SITE FOR RESIDUE ACT K 304
68HC5SOFTWAREARG A:6 , SER K:2 , HOH K:421 , GLN L:35 , ASP L:165 , PHE L:166 , ASP L:167 , ASP L:198 , ARG L:219 , ASN L:234 , CYS L:235 , GLU L:238 , ASP L:268 , GLU L:269 , PHE L:271 , HOH L:409 , HOH L:421 , HOH L:426 , HOH L:436 , HOH L:448 , HOH L:458 , HOH L:484 , HOH L:490 , HOH L:491 , HOH L:543 , HOH L:551 , HOH L:623BINDING SITE FOR RESIDUE KAN L 301
69HC6SOFTWAREASP L:31 , ILE L:40 , PHE L:53 , ALA L:100 , ILE L:101 , GLY L:103 , ILE L:215 , ASP L:216 , HOH L:432BINDING SITE FOR RESIDUE 0JN L 302
70HC7SOFTWARETHR L:76 , MSE L:79 , ACT L:304 , HOH L:482 , HOH L:509BINDING SITE FOR RESIDUE NA L 303
71HC8SOFTWARETHR L:76 , ALA L:77 , PHE L:78 , MSE L:79 , PRO L:80 , NA L:303BINDING SITE FOR RESIDUE ACT L 304
72HC9SOFTWARETRP L:233BINDING SITE FOR RESIDUE ACT L 305
73IC1SOFTWARELEU L:81 , HOH L:657BINDING SITE FOR RESIDUE ACT L 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GKI)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Leu A:186 -Pro A:187
2Leu C:186 -Pro C:187
3Leu D:186 -Pro D:187
4Leu E:186 -Pro E:187
5Leu F:186 -Pro F:187
6Leu G:186 -Pro G:187
7Leu H:186 -Pro H:187
8Leu I:186 -Pro I:187
9Leu J:186 -Pro J:187
10Leu K:186 -Pro K:187
11Asn L:32 -Val L:33
12Leu L:186 -Pro L:187

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GKI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GKI)

(-) Exons   (0, 0)

(no "Exon" information available for 4GKI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gkia_ A: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee........hhhhhh...............eeeee........eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki A   0 GmSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149      |159       169       179  |    189       199       209       219       229       239       249       259      |269  
                             |                                                                  69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 
                             1-MSE                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gkib_ B: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..eeeeee......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki B  15 LNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    24        34        44        54        64    |   74    |   84        94       104       114       124       134       144       154 |     164       174       184       194       204       214       224       234       244       254   |   264 |     
                                                                                 69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain C from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gkic_ C: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.........hhhhh...eeeee.......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki C   0 GmSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149      |159       169       179  |    189       199       209       219       229       239       249       259      |269  
                             1-MSE                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4gkid_ D: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..eeeeee......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhh.........eee........eeee..eeeee......eee.hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki D  18 NLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    27        37        47        57        67 |      77 |      87        97       107       117       127       137       147       157       167       177    |  187       197       207       217       227       237       247       257|      267    
                                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain E from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains d4gkie_ E: automated matches                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........hhhhhh...eeeee.......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh........eee........eeee..eeeee......eee.hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki E   6 RETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    15        25        35        45        55        65   |    75   |    85        95       105       115       125       135       145       155|      165       175      |185       195       205       215       225       235       245       255  |    265|     
                                                                                          69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain F from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains d4gkif_ F: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.............eeeee...eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki F   3 HIQRETSCSRPRLDADLYGYRWARDNGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    12  ||    26     || 40        50        60        70        80        90       100       110       120       130       140       150     | 160       170       180 |     190       200       210       220       230       240       250       260     | 270 
                                       15|          32|                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 
                                        20           37                                                                                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gkig_ G: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.............................eeeee........eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki G   0 GmSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149      |159       169       179  |    189       199       209       219       229       239       249       259      |269  
                             1-MSE                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain H from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains d4gkih_ H: automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeeeee......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh........eee........eeee..eeeee......eee.hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki H  17 SNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    26        36        46        56        66  |     76  |     86        96       106       116       126       136       146       156       166       176     | 186       196       206       216       226       236       246       256 |     266     
                                                                               69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain I from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4gkii_ I: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..eeeeee......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhh........eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki I  18 NLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    27        37        47        57        67 |      77 |      87        97       107       117       127       137       147       157       167       177    |  187       197       207       217       227       237       247       257|      267    
                                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain J from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gkij_ J: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee........hhhhhh...eeee........eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki J   0 GmSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149      |159       169       179  |    189       199       209       219       229       239       249       259      |269  
                             1-MSE                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain K from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4gkik_ K: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.................eeee........eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh.......eeee........eeee..eeeee......eeeehhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki K   1 mSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     | 160       170       180 |     190       200       210       220       230       240       250       260     | 270 
                            1-MSE                                                              69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE 


Chain L from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains d4gkil_ L: automated matches                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........hhhhh..eeeeee......eeeeee.......eeeeeeehhhhhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhh........eee........eeee..eeeee......eee.hhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gki L   7 ETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEmVRLNWLTAFmPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRmNNGLVDASDFDDERNGWPVEQVWKEmHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDmNKLQFHLmLDEFF 271
                                    16        26        36        46        56        66  |     76  |     86        96       106       116       126       136       146       156       166       176     | 186       196       206       216       226       236       246       256 |     266     
                                                                                         69-MSE    79-MSE                                                                      156-MSE                   182-MSE                                                                     258-MSE 266-MSE
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(-) SCOP Domains  (1, 12)

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(-)
Class: Alpha and beta proteins (a+b) (23004)

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(no "CATH Domain" information available for 4GKI)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        B0VD92_ACIBY | B0VD92: 4ej7 4feu 4fev 4few 4fex 4gkh

(-) Related Entries Specified in the PDB File

4ej7 CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, ATP-BOUND
4feu CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, WITH SUBSTRATE KANAMYCIN AND SMALL MOLECULE INHIBITOR ANTHRAPYRAZOLONE SP600125
4fev CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, WITH SUBSTRATE KANAMYCIN AND SMALL MOLECULE INHIBITOR PYRAZOLOPYRIMIDINE PP1
4few CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, WITH SUBSTRATE KANAMYCIN AND SMALL MOLECULE INHIBITOR PYRAZOLOPYRIMIDINE PP2
4fex CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(3')-IA, WITH SUBSTRATE KANAMYCIN AND SMALL MOLECULE INHIBITOR TYRPHOSTIN AG1478
4gkh RELATED ID: IDP91191 RELATED DB: TARGETTRACK