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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROPOSED GALACTAROLACTONE CYCLOISOMERASE FROM AGROBACTERIUM TUMEFACIENS, TARGET EFI-500704, WITH BOUND CA, DISORDERED LOOPS
 
Authors :  M. W. Vetting, J. T. Bouvier, L. L. Morisco, S. R. Wasserman, S. Sojitra, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Ef
Date :  06 Aug 12  (Deposition) - 29 Aug 12  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  Enolase, Proposed Galactarolactone Cycloisomerase, Enzyme Function Initiative, Efi, Structural Genomics, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, J. T. Bouvier, J. A. Gerlt, S. C. Almo
Purification, Crystallization And Structural Elucidation Of D-Galactaro-1, 4-Lactone Cycloisomerase From Agrobacterium Tumefaciens Involved In Pectin Degradation.
Acta Crystallogr. , Sect. F V. 72 36 2016
PubMed-ID: 26750482  |  Reference-DOI: 10.1107/S2053230X15023286

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ATU3139
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: C58

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CL5Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:194 , GLU A:220 , GLU A:246 , HOH A:567 , HOH A:678BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWAREGLU A:154 , GLU A:158 , ASP A:368 , LEU A:370 , HOH A:533 , HOH A:535BINDING SITE FOR RESIDUE CA A 402
3AC3SOFTWAREASP A:209 , GLY A:237 , HOH A:668 , HOH A:669 , HOH A:675 , HOH A:676BINDING SITE FOR RESIDUE CA A 403
4AC4SOFTWAREGLY A:250 , TYR A:252 , GLY A:253BINDING SITE FOR RESIDUE CL A 404
5AC5SOFTWAREVAL A:43 , TRP A:45 , ARG A:367 , HOH A:633BINDING SITE FOR RESIDUE CL A 405
6AC6SOFTWAREGLN A:90 , GLY A:92 , LEU A:93 , HOH A:616BINDING SITE FOR RESIDUE CL A 406
7AC7SOFTWAREILE A:304 , ASP A:331 , ASN A:335 , ARG A:338BINDING SITE FOR RESIDUE CL A 407
8AC8SOFTWAREALA A:115 , SER A:116 , MET A:119BINDING SITE FOR RESIDUE CL A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GGB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:317 -Pro A:318

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GGB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GGB)

(-) Exons   (0, 0)

(no "Exon" information available for 4GGB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4ggba1 A:1-123 automated matches                                                                       d4ggba2 A:124-374 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeee....eeeeee..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhh..ee......hhhhhhhhhhhhhhh............eeee...hhhhhhh.......ee..eee...........hhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ggb A   1 MKITAVRTHLLHVLVEIECDDGTVGWGECLGPARPNAAVVQAYSGWLIGQDPRQTEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGDRVSDNASEMAERRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGIDWFEEPVVPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHVWGTGVQIAAALQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDALTEFR 374
                                    10||      39        49        59        69        79        89        99       109       119       129     ||146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366        
                                     11|                                                                                                     135|                                                                                                                                                                                                                                       
                                      31                                                                                                      143
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GGB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GGB)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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        GCI_AGRFC | A9CEQ8: 4hpn

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