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(-) Description

Title :  MALARIA INVASION MACHINERY PROTEIN-NANOBODY COMPLEX
 
Authors :  S. Khamrui, S. Turley, E. Pardon, J. Steyaert, C. Verlinde, E. Fan, L. W. W. G. J. Hol
Date :  03 Aug 12  (Deposition) - 03 Jul 13  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Malaria Invasion Machinery Protein, Protein Binding, Mtip, Myoa Tail Interacting Protein, Immune System, Nanobody (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Khamrui, S. Turley, E. Pardon, J. Steyaert, E. Fan, C. L. Verlinde, L. W. Bergman, W. G. Hol
The Structure Of The D3 Domain Of Plasmodium Falciparum Myosin Tail Interacting Protein Mtip In Complex With A Nanobody.
Mol. Biochem. Parasitol. V. 190 87 2013
PubMed-ID: 23831371  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2013.06.003

(-) Compounds

Molecule 1 - MYOSIN A TAIL DOMAIN INTERACTING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3) ROSETTA
    Expression System Taxid: 469008
    Expression System Vector Type: PET28
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 137-204)
    Gene: MTIP, PFL2225W
    Mutation: YES
    Organism Scientific: PLASMODIUM FALCIPARUM 3D7
    Organism Taxid: 36329
 
Molecule 2 - NANOBODY
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET22B
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:29 , ALA B:30 , ASN B:33 , HOH B:359BINDING SITE FOR RESIDUE EDO B 201
2AC2SOFTWAREGLN B:41 , GLU B:46 , ARG B:47BINDING SITE FOR RESIDUE EDO B 202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:23 -B:98

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GFT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
                                                                                               
               SCOP domains d4gfta_ A: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.....eeehhhhhhhhhh...hhhhhhhhhhhhh...eeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 4gft A 140 NVEELIKMFAHFDNNSTGYLTKSQMKNILTTWALTDQEAIDALNAFSSEDNIDYKLFCEDILQ 204
                                   149       159       169 ||    181       191       201   
                                                         171|                              
                                                          174                              


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains d4gftb_ B: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eee.....eeeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee........hhhhh.ee...eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gft B   2 xVQLQESGGGTVQPGGSLKLSCSAAPERAFSNYAMGWFRQAPGQEREFVAGITGSGRSQYYADSVKGRFTISRDNAMNAVYLQMNSVKAEDTAVYYCAARVVPVFSDSTKGYVYWGQGTQVTVSSH 127
                            |       11        21        31        41        51        61        71        81        91       101       111       121      
                            2-PCA
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 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GFT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GFT)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q8I4W8_PLAF7 | Q8I4W8: 2qac 4aom 4mzj 4mzk 4mzl 4r1e

(-) Related Entries Specified in the PDB File

2auc 2qac 4ggn