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(-) Description

Title :  LASSA NUCLEOPROTEIN WITH DSRNA REVEALS NOVEL MECHANISM FOR IMMUNE SUPPRESSION
 
Authors :  X. Jiang, Q. Huang, W. Wang, H. Dong, H. Ly, Y. Liang, C. Dong, Scottish S Proteomics Facility (Sspf)
Date :  24 Jul 12  (Deposition) - 03 Apr 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym./Biol. Unit :  A,E,F
Keywords :  Structural Genomics, Scottish Structural Proteomics Facility, Sspf, 3'-5'-Ribonuclease, Nuclease, Viral Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Jiang, Q. Huang, W. Wang, H. Dong, H. Ly, Y. Liang, C. Dong
Structures Of Arenaviral Nucleoproteins With Triphosphate Dsrna Reveal A Unique Mechanism Of Immune Suppression.
J. Biol. Chem. V. 288 16949 2013
PubMed-ID: 23615902  |  Reference-DOI: 10.1074/JBC.M112.420521

(-) Compounds

Molecule 1 - RNA (5'-R(P*GP*CP*CP*C)-3')
    Chains: E
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - RNA (5'-R(P*GP*GP*GP*C)-3')
    Chains: F
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - NUCLEOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLOU3
    Expression System Strain: ROSETTA CELLS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN RESIDUES 364-569
    Gene: N
    Organism Scientific: LASSA VIRUS
    Organism Taxid: 11622
    Strain: JOSIAH
    Synonym: NUCLEOCAPSID PROTEIN, PROTEIN N

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : AEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:399 , CYS A:506 , HIS A:509 , CYS A:529BINDING SITE FOR RESIDUE ZN A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G9Z)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:462 -Gly A:463

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G9Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G9Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4G9Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh......eeeeeee..eeeeeeee.....eeeeee....hhhhhhhhhhhh...hhhhhh....hhhhhhhhhh....eeee..hhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.......ee..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g9z A 357 AMDHVEFGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEEITPHCALMDCIMFDAAVSGGLNTSVLRAVLPRDMVFRTSTPRVVL 569
                                   366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       524       534       544       554       564     
                                                                                                                                                                                        515|                                             
                                                                                                                                                                                         524                                             


Chain E from PDB  Type:RNA  Length:4
                                    
                 4g9z E   4 GCCC   7


Chain F from PDB  Type:RNA  Length:4
                                    
                 4g9z F   4 GGGC   7
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G9Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G9Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G9Z)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln A:462 - Gly A:463   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAP_LASSJ | P13699: 3mwp 3mwt 3mx2 3mx5 3q7b 3q7c 4fvu 4gv3 4gv6 4gv9

(-) Related Entries Specified in the PDB File

3mwp C-TERMINAL DOMAIN WITH DSRNA COMPLEX
3mwt
3mx2
3mx5