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(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE HOMOLOG FROM ESCHERICHIA COLI, TARGET EFI-501172, WITH BOUND MG, OPEN LID
 
Authors :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, D. Dunaway-Mariano, K J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Date :  23 Jul 12  (Deposition) - 15 Aug 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Had, Putative Phosphoglucomutase, Enzyme Function Initiative, Efi, Structural Genomics, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, D. Dunaway-Mariano, K. N. Allen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, With Bound Mg, Open Li
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-PHOSPHOGLUCOMUTASE
    Chains: A
    EC Number: 5.4.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YCJU, B1317, JW1310
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: STR. K-12 SUBSTR. MG1655
    Synonym: BETA-PGM

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MG3Ligand/IonMAGNESIUM ION
4SO43Ligand/IonSULFATE ION
5UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4SO46Ligand/IonSULFATE ION
5UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:9 , ASP A:11 , ASP A:172 , HOH A:401 , HOH A:402 , HOH A:403BINDING SITE FOR RESIDUE MG A 301
2AC2SOFTWAREHOH A:404 , HOH A:405 , HOH A:406BINDING SITE FOR RESIDUE MG A 302
3AC3SOFTWAREASP A:9 , LEU A:10 , ASP A:11 , SER A:116 , HOH A:463BINDING SITE FOR RESIDUE CL A 303
4AC4SOFTWAREHOH A:423 , HOH A:449 , HOH A:496 , HOH A:551 , HOH A:567 , HOH A:568BINDING SITE FOR RESIDUE MG A 304
5AC5SOFTWAREGLY A:97 , ILE A:98 , ARG A:99 , SER A:100 , HOH A:414BINDING SITE FOR RESIDUE SO4 A 305
6AC6SOFTWAREGLU A:129 , LEU A:130 , ARG A:131 , GLU A:132 , HOH A:493BINDING SITE FOR RESIDUE SO4 A 306
7AC7SOFTWAREHIS A:21 , TYR A:82 , SER A:118 , ASN A:120 , HOH A:453 , HOH A:455BINDING SITE FOR RESIDUE SO4 A 307
8AC8SOFTWAREGLN A:174BINDING SITE FOR RESIDUE CL A 308
9AC9SOFTWARELYS A:2 , LEU A:3 , TRP A:209 , SER A:213BINDING SITE FOR RESIDUE GOL A 310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G9B)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:147 -Pro A:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G9B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G9B)

(-) Exons   (0, 0)

(no "Exon" information available for 4G9B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains d4g9ba_ A: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee........hhhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh..eeee.....hhhhhhhhh.hhhhh.ee.hhhhh......hhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhh.eeeee........eee.hhhhhhhhhhhhhhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g9b A   0 VMKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNVAENLYFQ 226
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G9B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G9B)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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    Lys A:147 - Pro A:148   [ RasMol ]  
 
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