4G6U - JenaLib

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Title :   CDIA-CT/CDII TOXIN AND IMMUNITY COMPLEX FROM ESCHERICHIA COLI

Authors :   R. P. Morse, K. Nikolakakis, J. Willet, E. Gerrick, D. A. Low, C. S. Hayes C. W. Goulding

Date :   19 Jul 12 (Deposition) - 12 Dec 12 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Beta-Augmentation, Dnase, Toxin, Immunity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. P. Morse, K. C. Nikolakakis, J. L. Willett, E. Gerrick, D. A. Low, C. S. Hayes, C. W. Goulding
Structural Basis Of Toxicity And Immunity In Contact-Dependent Growth Inhibition (Cdi) Systems.
Proc. Natl. Acad. Sci. Usa V. 109 21480 2012
PubMed-ID: 23236156 | Reference-DOI: 10.1073/PNAS.1216238110

Molecule 1 - EC869 CDIA-CT
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 88-377
	Organism Scientific	:	ESCHERICHIA COLI O157:H7
	Organism Taxid	:	83334

Molecule 2 - EC869 CDII
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ESCHERICHIA COLI O157:H7
	Organism Taxid	:	83334

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 19)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CL	1	Ligand/Ion	CHLORIDE ION
3	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
4	YT3	3	Ligand/Ion	YTTRIUM (III) ION
5	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
4	YT3	-1	Ligand/Ion	YTTRIUM (III) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	3	Mod. Amino Acid	SELENOMETHIONINE
4	YT3	3	Ligand/Ion	YTTRIUM (III) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (3, 17)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
4	YT3	3	Ligand/Ion	YTTRIUM (III) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:177 , ASP A:198 , HOH A:418 , HOH A:434	BINDING SITE FOR RESIDUE ZN A 301
2	AC2	SOFTWARE	LYS A:195 , LYS A:242 , GLU A:243 , GLY B:134	BINDING SITE FOR RESIDUE CL A 302
3	AC3	SOFTWARE	ASP A:89 , ARG B:40 , GLN B:57 , ASP B:61 , YT3 B:205 , HOH B:318 , HOH B:322 , HOH B:328	BINDING SITE FOR RESIDUE ACT B 201
4	AC4	SOFTWARE	GLU B:23 , TRP B:87 , HOH B:317	BINDING SITE FOR RESIDUE ACT B 202
5	AC5	SOFTWARE	VAL A:95 , GLN A:96 , ASN A:99 , LYS A:137 , GLU A:160 , GLU B:70 , YT3 B:204 , HOH B:315 , HOH B:319	BINDING SITE FOR RESIDUE ACT B 203
6	AC6	SOFTWARE	GLU A:160 , ASP B:66 , GLU B:70 , ACT B:203 , HOH B:315 , HOH B:316	BINDING SITE FOR RESIDUE YT3 B 204
7	AC7	SOFTWARE	ASP A:89 , ASP B:61 , ACT B:201 , HOH B:312 , HOH B:322 , HOH B:327	BINDING SITE FOR RESIDUE YT3 B 205
8	AC8	SOFTWARE	GLU B:153	BINDING SITE FOR RESIDUE YT3 B 206

(no "SS Bond" information available for 4G6U)

(no "Cis Peptide Bond" information available for 4G6U)

(no "SAP(SNP)/Variant" information available for 4G6U)

(no "PROSITE Motif" information available for 4G6U)

(no "Exon" information available for 4G6U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhh..hhhhhhhh....hhhhhhhhhhhh.....eeee.hhh......hhhhhhhhhhhhhhhhh..............eee....eeeeeee....hhhhhhh.hhhhhhhhhhhhhhhhh.eeee..eeee.hhh.eeeeeeeee...hhhhhhhhhhhhhhhhhh.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g6u A  85 VmTSDEAKAYVQKWNGRDLTKIDVNSPEWTKFAVFASDPENQAmLVSGGLLVKDITKAAISFmSRNTATATVNASEIGmQWGQGNmKQGmPWEDYVGKSLPADARLPKNFKIFDYYDGATKTATSVKSIDTQTmAKLANPNQVYSSIKGNIDAAAKFKEYALSGRELTSSmISNREIQLAIPADTTKTQWAEINRAIEYGKSQGVKVTVTQVK 297
                             |      94       104       114       124   |   134       144  |    154       164     | 174       184       194       204       214   |   224       234       244       254|      264       274       284       294   
                             |                                       128-MSE            147-MSE         163-MSE  |   |                                         218-MSE                              255-MSE                                      
                            86-MSE                                                                             170-MSE                                                                                                                           
                                                                                                                   174-MSE

Chain B from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains d4g6ub_ B: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee....eeeeeeee...eee......eee....hhhhhhhhhhhhhhh.....hhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhh..eeeeeeee..eeeeee.eeee..eee....hhhhheeee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g6u B   2 AFNKDQDYWANIFVTPDFLSVETYSGLGmTGRDPLFSPRLLQPDVDDKSLGEEILQALSDSRTLDVLEERVAFFDLEKSKEQYAAWIATLmEKYGYRTKRALFKNmKKVGIHLVNDVITIRPSFHEKLEAWSGNRINESDYVVLPADSSPTEIGSGLRLALSR 164
                                    11        21        31        41        51        61        71        81        91|      101     | 111       121       131       141       151       161   
                                                       30-MSE                                                        92-MSE        107-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a+b) (23004)

Fold: NMB0488-like (2)

Superfamily: NMB0488-like (2)

Family: automated matches (1)

Protein domain: automated matches (1)

Escherichia coli [TaxId: 83334] (1)

d4g6ub_

(no "CATH Domain" information available for 4G6U)

(no "Pfam Domain" information available for 4G6U)

Asymmetric Unit(hide GO term definitions)

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Description

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Ligands, Modified Residues, Ions (5, 19)

Sites (8, 8)

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