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(-) Description

Title :  CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 2
 
Authors :  H. Bulut, L. Von Kleist, W. Saenger, V. Haucke
Date :  17 Jul 12  (Deposition) - 01 Aug 12  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Propeller, Endocytosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Von Kleist, W. Stahlschmidt, H. Bulut, K. Gromova, D. Puchkov, M. J. Robertson, K. A. Macgregor, N. Tomilin, N. Tomlin, A. Pechstein, N. Chau, M. Chircop, J. Sakoff, J. P. Von Kries, W. Saenger, H. G. Krausslich, O. Shupliakov, P. J. Robinson, A. Mccluskey, V. Haucke
Role Of The Clathrin Terminal Domain In Regulating Coated Pit Dynamics Revealed By Small Molecule Inhibition.
Cell(Cambridge, Mass. ) V. 146 471 2011
PubMed-ID: 21816279  |  Reference-DOI: 10.1016/J.CELL.2011.06.025

(-) Compounds

Molecule 1 - CLATHRIN HEAVY CHAIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN
    Gene: CLH17, CLTC, CLTCL2, KIAA0034
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLATHRIN HEAVY CHAIN ON CHROMOSOME 17, CLH-17

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 18)

Asymmetric/Biological Unit (5, 18)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2DMS4Ligand/IonDIMETHYL SULFOXIDE
3EDO6Ligand/Ion1,2-ETHANEDIOL
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
5VH21Ligand/IonN-[5-[(4-BROMOPHENYL)METHYL]-4-HYDROXY-1,3-THIAZOL-2-YL]NAPHTHALENE-1-SULFONAMIDE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:27 , THR A:31 , PHE A:110 , TRP A:111 , HOH A:894BINDING SITE FOR RESIDUE DMS A 401
02AC2SOFTWAREARG A:176 , VAL A:177 , ARG A:221 , GLN A:257 , ASN A:258 , ASP A:259 , HOH A:805 , HOH A:875BINDING SITE FOR RESIDUE DMS A 402
03AC3SOFTWAREILE A:66 , LYS A:98 , GLN A:174 , VH2 A:418 , HOH A:899BINDING SITE FOR RESIDUE DMS A 403
04AC4SOFTWAREHIS A:145 , SER A:146 , HOH A:897BINDING SITE FOR RESIDUE ACT A 404
05AC5SOFTWAREASN A:175 , GLN A:257 , ASN A:258BINDING SITE FOR RESIDUE ACT A 405
06AC6SOFTWARESER A:136 , GLN A:137 , GLY A:239 , HOH A:690BINDING SITE FOR RESIDUE ACT A 406
07AC7SOFTWARELYS A:140 , MET A:141 , HOH A:699 , HOH A:745BINDING SITE FOR RESIDUE ACT A 407
08AC8SOFTWARESER A:67 , LEU A:82 , THR A:87 , GLN A:89 , HOH A:899BINDING SITE FOR RESIDUE EDO A 408
09AC9SOFTWAREARG A:297 , GLY A:300BINDING SITE FOR RESIDUE EDO A 409
10BC1SOFTWAREGLN A:203 , LYS A:205 , GLU A:268 , ASP A:271 , ARG A:354BINDING SITE FOR RESIDUE PEG A 410
11BC2SOFTWARETYR A:294 , MET A:295 , HOH A:873 , HOH A:902BINDING SITE FOR RESIDUE PEG A 411
12BC3SOFTWAREASN A:92 , MET A:99 , GLU A:133BINDING SITE FOR RESIDUE EDO A 412
13BC4SOFTWARELYS A:112 , ALA A:263 , VAL A:305 , THR A:306 , HOH A:716 , HOH A:809 , HOH A:811 , HOH A:844BINDING SITE FOR RESIDUE EDO A 414
14BC5SOFTWAREMET A:104 , THR A:105 , ASP A:106 , TYR A:128 , THR A:238BINDING SITE FOR RESIDUE DMS A 415
15BC6SOFTWAREMET A:99 , LYS A:100 , ALA A:101 , GLY A:134 , GLU A:135 , HOH A:898BINDING SITE FOR RESIDUE EDO A 416
16BC7SOFTWAREPHE A:251 , PHE A:252 , HOH A:801 , HOH A:895 , HOH A:896BINDING SITE FOR RESIDUE ACT A 417
17BC8SOFTWAREGLN A:3 , ILE A:4 , VAL A:50 , ILE A:52 , ARG A:64 , PHE A:91 , ILE A:93 , LYS A:96 , LYS A:98 , GLN A:174 , ASN A:333 , DMS A:403 , HOH A:653 , HOH A:907BINDING SITE FOR RESIDUE VH2 A 418

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G55)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G55)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G55)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G55)

(-) Exons   (0, 0)

(no "Exon" information available for 4G55)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4g55a1 A:0-330 automated matches                                                                                                                                                                                                                                                                                                          d4g55a2 A:331-357           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee.hhhh.hhhhh....eeeee..eeeeeeee..eeeeeeee.......eeee....eeee.....eeeeee..eeeeee....eeeeeee....eeeeee....eeeeee..eeeeee.......eeeee.hhhhh..eeeeeee.....eeeeeeeeee..eeeeeeeeee....eeeee...eeeeeee........eeeeeeeeee..eeeeeeee.............eeeee..........eeeeeee....eeeeee...eeeeee.....eeeeee.....eeeeeeehhhheeeeee...eeeeeee...hhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g55 A   0 FMAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNL 357
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G55)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G55)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4g55
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLH1_HUMAN | Q00610: 2xzg

(-) Related Entries Specified in the PDB File

2xzg CLATHRIN TERMINAL DOMAIN COMPLEXED WITH PITSTOP 1