4G4X - JenaLib

Title :   CRYSTAL STRUCTURE OF PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN FROM ACINETOBACTER BAUMANNII

Authors :   W. C. Lee, J. H. Song, J. S. Park, H. Y. Kim

Date :   16 Jul 12 (Deposition) - 24 Jul 13 (Release) - 24 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Ompa-Like Domain, Membrane Protein, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. C. Lee, J. S. Park, J. H. Song, S. I. Kim, J. C. Lee, J. Cheong, H. Y. Kim
Enantiomer-Dependent Amino Acid Binding Affinity Of Ompa-Like Domains From Acinetobacter Baumannii Peptidoglycan-Associated Lipoprotein And Ompa
To Be Published
PubMed: search

Compounds

Molecule 1 - PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 75-184
	Gene	:	PAL
	Organism Scientific	:	ACINETOBACTER BAUMANNII
	Organism Taxid	:	980514
	Strain	:	TCDC-AB0715

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:85 , ASP A:86 , THR A:119 , ASP A:120 , ARG A:122 , ASN A:128 , LEU A:131 , ARG A:135 , ARG A:177	BINDING SITE FOR RESIDUE DAL A 201
2	AC2	SOFTWARE	SER A:87 , SER A:88 , ASP A:89 , LEU A:131 , ARG A:134 , HOH A:312	BINDING SITE FOR RESIDUE GOL A 202
3	AC3	SOFTWARE	TYR A:85 , THR A:124 , ARG A:125 , GLU A:126 , LYS A:174 , HOH A:338 , HOH A:355	BINDING SITE FOR RESIDUE GOL A 203
4	AC4	SOFTWARE	ARG A:122 , THR A:124 , GLU A:126 , TYR A:127 , LYS A:174 , HOH A:350 , HOH A:364 , HOH A:407 , HOH A:411	BINDING SITE FOR RESIDUE SO4 A 204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4g4xa_ A: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee.........hhhhhhhhheeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4g4x A  77 AKRVVHFDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPVNPGHDESAWKENRRVEINYE 184
                                    86        96       106       116       126       136       146       156       166       176

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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