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(-) Description

Title :  LIGG FROM SPHINGOBIUM SP. SYK-6 IS RELATED TO THE GLUTATHIONE TRANSFERASE OMEGA CLASS
 
Authors :  E. Meux, P. Prosper, E. Masai, G. Mulliert Carlin, S. Dumarcay, M. More C. Didierjean, E. Gelhaye, F. Favier
Date :  10 Jul 12  (Deposition) - 03 Oct 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Thioredoxin Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Meux, P. Prosper, E. Masai, G. Mulliert, S. Dumarcay, M. Morel, C. Didierjean, E. Gelhaye, F. Favier
Sphingobium Sp. Syk-6 Ligg Involved In Lignin Degradation I Structurally And Biochemically Related To The Glutathione Transferase Omega Class.
Febs Lett. V. 586 3944 2012
PubMed-ID: 23058289  |  Reference-DOI: 10.1016/J.FEBSLET.2012.09.036

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21 (+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LIGG
    Organism Scientific: SPHINGOMONAS PAUCIMOBILIS
    Organism Taxid: 13689
    Strain: SYK-6

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GSH1Ligand/IonGLUTATHIONE
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (4, 22)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GSH2Ligand/IonGLUTATHIONE
3MSE16Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:12 , CYS A:15 , PRO A:16 , PHE A:17 , ARG A:43 , THR A:55 , ALA A:56 , LEU A:57 , PRO A:58 , GLU A:70 , SER A:71 , ACT A:301 , HOH A:401 , HOH A:406 , HOH A:426 , HOH A:475 , HOH A:487 , HOH A:501 , HOH A:547 , HOH A:558BINDING SITE FOR RESIDUE GSH A 300
2AC2SOFTWAREPRO A:16 , TYR A:113 , TYR A:214 , TYR A:217 , GSH A:300 , HOH A:475 , HOH A:775BINDING SITE FOR RESIDUE ACT A 301
3AC3SOFTWARETYR A:204 , ARG A:205 , GLU A:209 , TRP A:241 , ARG A:242 , HOH A:476 , HOH A:495 , HOH A:497 , HOH A:607 , HOH A:614 , HOH A:620BINDING SITE FOR RESIDUE SO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G10)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:57 -Pro A:58
2Glu A:84 -Pro A:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G10)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...hhhhhhhhhhhhhhh...eeee.......hhhhhhhhh......eee.....eeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....................hhhhh.................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g10 A   2 AEPQELTIYHIPGCPFSERVEImLELKGLRmKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESmVILRYLEQRYPEPAVAHPDPFCHAVEGmLAELAGPFSGAGYRmILNREIGKREEmRAAVDAEFGKVDAFLKRYATGSDFLFDDRFGWAEVAFTPmFKRLWFLDYYEDYEVPANFDRVLRWRAACTAHPAAQYRSKEELLKLYYDYTQGGGNGRIPEGRSISSFSPDVDWRTRPmPPRDKWGHAATDAELGLT 264
                                    11        21  |     31|       41        51        61        71|       81        91       101       111   |   121     | 131       141       151       161     | 171       181       191       201       211       221       231       241    |  251       261   
                                                 24-MSE  32-MSE                                  72-MSE                     100-MSE        115-MSE     127-MSE                                 167-MSE                                                                        246-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G10)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G10)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G10)

(-) Gene Ontology  (1, 1)

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