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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE C366S MUTANT OF HDH FROM BRUCELLA SUIS IN COMPLEX WITH A SUBSTITUTED BENZYL KETONE
 
Authors :  K. D'Ambrosio, G. De Simone
Date :  09 Jul 12  (Deposition) - 02 Oct 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rossmann Fold, L-Histidinol Dehydrogenase, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. D'Ambrosio, M. Lopez, N. A. Dathan, S. Ouahrani-Bettache, S. Kohler, G. Ascione, S. M. Monti, J. Y. Winum, G. De Simone
Structural Basis For The Rational Design Of New Anti-Brucella Agents: The Crystal Structure Of The C366S Mutant Of L-Histidinol Dehydrogenase From Brucella Suis.
Biochimie V. 97 114 2014
PubMed-ID: 24140957  |  Reference-DOI: 10.1016/J.BIOCHI.2013.09.028

(-) Compounds

Molecule 1 - HISTIDINOL DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HISD, BR0252, BS1330_I0253
    Mutation: YES
    Organism Scientific: BRUCELLA SUIS
    Organism Taxid: 204722
    Strain: 1330
    Synonym: HDH

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
10VD1Ligand/Ion(3S)-3-AMINO-1-[4-(BENZYLOXY)PHENYL]-4-(1H-IMIDAZOL-4-YL)BUTAN-2-ONE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3GOL1Ligand/IonGLYCEROL
4ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
10VD2Ligand/Ion(3S)-3-AMINO-1-[4-(BENZYLOXY)PHENYL]-4-(1H-IMIDAZOL-4-YL)BUTAN-2-ONE
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3GOL2Ligand/IonGLYCEROL
4ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:262 , ASP A:361 , HIS A:420 , DMS A:504 , 0VD A:505BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWAREASP A:313 , ASP A:316 , HIS A:433 , HIS A:436BINDING SITE FOR RESIDUE ZN A 502
3AC3SOFTWAREPHE A:56 , GLY A:189 , GLN A:191 , ASN A:214 , HOH A:613 , HOH A:797BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWAREGLN A:259 , HIS A:262 , GLU A:357 , VAL A:358 , ASP A:361 , HIS A:420 , ZN A:501 , 0VD A:505BINDING SITE FOR RESIDUE DMS A 504
5AC5SOFTWAREPRO A:132 , ALA A:136 , TYR A:138 , SER A:140 , HIS A:262 , GLU A:327 , HIS A:328 , GLU A:357 , ASP A:361 , TYR A:362 , HIS A:368 , GLU A:415 , LEU A:417 , HIS A:420 , ZN A:501 , DMS A:504BINDING SITE FOR RESIDUE 0VD A 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G09)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G09)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G09)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G09)

(-) Exons   (0, 0)

(no "Exon" information available for 4G09)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee....hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.....eeeeeeee..eeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhh.hhhhhhhhhhh...eee..hhhhhhhhhhhh........eee...hhhhhhhhhhhh...ee.......eeeeee....hhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhheeee..hhhhhhhhhhhhh..eeeee..hhhhh........eeee....hhhhhhhh..........hhhhh....hhhh.eeeeeeee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g09 A   2 VTTLRQTDPDFEQKFAAFLSGEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAGVSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGSNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIRLNLLEHHHHHH 438
                                    11        21||      36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436  
                                               22|                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                28
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G09)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G09)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G09)

(-) Gene Ontology  (9, 9)

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 Related Entries

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UniProtKB/Swiss-Prot
        HISX_BRUSU | Q8G2R2: 4g07

(-) Related Entries Specified in the PDB File

4g07