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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTAMINYL CYCLASE FROM DROSOPHILA MELANOGASTER IN SPACE GROUP I4
 
Authors :  P. Kolenko, B. Koch, M. T. Stubbs
Date :  02 Jul 12  (Deposition) - 05 Sep 12  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Alpha/Beta Hydrolase, Pglu Formation, Alzheimer`S Disease, Pyroglutamate, Pglu-Amyloid, Glycosylation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Kolenko, B. Koch, J. U. Rahfeld, S. Schilling, H. U. Demuth, M. T. Stubbs
Structure Of Glutaminyl Cyclase From Drosophila Melanogaste In Space Group I4.
Acta Crystallogr. , Sect. F V. 69 358 2013
PubMed-ID: 23545638  |  Reference-DOI: 10.1107/S1744309113005575

(-) Compounds

Molecule 1 - CG32412
    Chains: A
    EC Number: 2.3.2.5, 3.4.-.-
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Plasmid: PPICZALPHAB
    Expression System Strain: X33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-340
    Gene: QC, CG10487, CG32412, DMEL_CG32412
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: GH11174P

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric Unit (5, 12)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO45Ligand/IonSULFATE ION
5ZN1Ligand/IonZINC ION
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO45Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 44)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO12Ligand/Ion1,2-ETHANEDIOL
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO420Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:131 , GLU A:171 , HIS A:297 , HOH A:843BINDING SITE FOR RESIDUE ZN A 401
02AC2SOFTWAREGLU A:38 , ASN A:42 , TRP A:308 , NAG A:403 , HOH A:622 , HOH A:660 , HOH A:774 , HOH A:807 , HOH A:813 , HOH A:844BINDING SITE FOR RESIDUE NAG A 402
03AC3SOFTWARENAG A:402 , BMA A:404 , HOH A:633 , HOH A:803 , HOH A:825BINDING SITE FOR RESIDUE NAG A 403
04AC4SOFTWARENAG A:403 , HOH A:853BINDING SITE FOR RESIDUE BMA A 404
05AC5SOFTWAREGLU A:170 , ASP A:218 , LEU A:219 , VAL A:270 , ASP A:271 , TRP A:296 , HOH A:617 , HOH A:843BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWARELYS A:118 , LYS A:174 , GLU A:175 , TRP A:176BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREPRO A:87 , VAL A:88 , LYS A:174 , THR A:177 , ASP A:178 , HOH A:703 , HOH A:841BINDING SITE FOR RESIDUE SO4 A 407
08AC8SOFTWARELEU A:262 , SER A:263 , ARG A:264 , HOH A:757BINDING SITE FOR RESIDUE SO4 A 408
09AC9SOFTWAREARG A:300 , ASN A:302 , ASN A:305 , HOH A:815BINDING SITE FOR RESIDUE SO4 A 409
10BC1SOFTWARETYR A:325 , ARG A:328 , HIS A:329 , VAL A:333 , HOH A:721BINDING SITE FOR RESIDUE EDO A 410
11BC2SOFTWAREARG A:264 , HOH A:722 , HOH A:749BINDING SITE FOR RESIDUE SO4 A 411
12BC3SOFTWAREGLN A:84 , ARG A:85 , HOH A:642BINDING SITE FOR RESIDUE SO4 A 412

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:113 -A:136

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:131 -Ser A:132
2Thr A:290 -Pro A:291

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FWU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FWU)

(-) Exons   (0, 0)

(no "Exon" information available for 4FWU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeeeeee...eeeeeeeeeeee.....eeeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhh.....hhhh.eeeeeeee........eee.hhhhhhhhhhhhhhhhhhhhh.........eeeee........hhhhhh....eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fwu A  33 QWRDDEVHFNRTLDSILVPRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTINPQAQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRTAGQLEGNNNMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFPDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKRHTSPVNLRF 337
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192 ||    208       218       228       238       248       258       268       278       288       298       308       318       328         
                                                                                                                                                                                           194|                                                                                                                                        
                                                                                                                                                                                            201
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FWU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FWU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FWU)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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        Q9VRQ9_DROME | Q9VRQ9: 4f9u 4f9v

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4f9u 4f9v