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(-) Description

Title :  CRYSTAL STRUCTURE OF FABG4 COMPLEXED WITH COENZYME NADH
 
Authors :  D. Dutta, S. Bhattacharyya, A. K. Das
Date :  30 Jun 12  (Deposition) - 28 Nov 12  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Rossmann Fold, Short-Chain Dehydrogenase/Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Dutta, S. Bhattacharyya, A. Roychowdhury, R. Biswas, A. K. Das
Crystal Structure Of Hexanoyl-Coa Bound To Beta-Ketoacyl Reductase Fabg4 Of Mycobacterium Tuberculosis
Biochem. J. V. 450 127 2013
PubMed-ID: 23163771  |  Reference-DOI: 10.1042/BJ20121107

(-) Compounds

Molecule 1 - 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: KETOREDUCTASE, PROBABLE 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE FABG4 (3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE)

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2ZPG1Ligand/Ion(2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL-4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2ZPG1Ligand/Ion(2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL-4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2ZPG-1Ligand/Ion(2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL-4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:220 , ARG A:223 , ILE A:225 , ASP A:244 , LEU A:266 , ASP A:267 , VAL A:268 , ASN A:295 , ALA A:296 , GLY A:297 , ILE A:298 , LEU A:345 , SER A:346 , TYR A:360 , LYS A:364 , PRO A:390 , GLY A:391 , ILE A:393 , THR A:395 , HOH A:608 , HOH A:667BINDING SITE FOR RESIDUE NAI A 501
2AC2SOFTWAREASN A:354 , HOH B:602BINDING SITE FOR RESIDUE ZPG A 502
3AC3SOFTWAREALA B:222 , ARG B:223 , ILE B:225 , ASP B:244 , VAL B:245 , LEU B:266 , ASP B:267 , VAL B:268 , ASN B:295 , GLY B:297 , TYR B:360 , LYS B:364 , PRO B:390 , ILE B:393 , THR B:395 , HOH B:635BINDING SITE FOR RESIDUE NAI B 501
4AC4SOFTWAREGLY C:220 , ARG C:223 , GLY C:224 , ILE C:225 , ASP C:244 , ASP C:267 , VAL C:268 , ASN C:295 , GLY C:297 , ILE C:298 , SER C:347 , TYR C:360 , LYS C:364 , PRO C:390 , ILE C:393 , HOH C:602BINDING SITE FOR RESIDUE NAI C 501
5AC5SOFTWAREGLY D:220 , ARG D:223 , ILE D:225 , ASP D:244 , VAL D:245 , LEU D:266 , ASP D:267 , VAL D:268 , ASN D:295 , GLY D:297 , LEU D:345 , SER D:347 , TYR D:360 , LYS D:364 , GLY D:391 , ILE D:393 , THR D:395BINDING SITE FOR RESIDUE NAI D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FW8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:71 -Gly A:72
2Gly D:337 -Glu D:338

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FW8)

(-) Exons   (0, 0)

(no "Exon" information available for 4FW8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeee...hhhhhhhhhh.........eeeeeee.....hhhhhhhhhhhhhhhh..eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhh.........eeeee..................eeeee...hhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee...........hhhhhhhhhhh.......hhhhhhhhhhhhhh.........eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fw8 A  20 SFLARQLGVPQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGDSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                    29        39        49        59        69  ||    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       
                                                                               72|                                                                                                                                                                                                                                                                                                                                                                                     
                                                                                81                                                                                                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..................eeeeee...hhhhhhhhhh.........eeeeeee.....hhhhhhhhhhhhhhhhh.eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhh.........eeeee..................eeee....hhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fw8 B  20 SFLARQLGPQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGDSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETQMTAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                   |30        40        50        60        70 ||     88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398|      409       419       429       439       449     
                                  27|                                         72|                                                                                                                                                                                                                                                                                                                          398|                                                      
                                   29                                          81                                                                                                                                                                                                                                                                                                                           400                                                      


Chain C from PDB  Type:PROTEIN  Length:418
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeee...hhhhhhhhh...............eeeeeee.....hhhhhhhhhhhhhhhhh.eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhhh.........eeeee.................eeeeee...hhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhh.......hhhhhhhhhhhhhh.........eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fw8 C  29 PQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGNNRWADSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIEAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                    38        48        58        68     || 81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391  ||   406       416       426       436       446        
                                                                        74|                                                                                                                                                                                                                                                                                                                         394|                                                      
                                                                         78                                                                                                                                                                                                                                                                                                                          400                                                      


Chain D from PDB  Type:PROTEIN  Length:409
                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeee....hhhhhhhhh..........eeeeeee.....hhhhhhhhhhhhhhhh..eeeeeeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee..........hhhhhhhhh.........eeeee..................eeee....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhh.eeee......hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhh...........hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fw8 D  29 PQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGDSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESNLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETIPLATREGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA 454
                                    38        48        58        68   ||   86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246||     259       269       279       289       299       309       319       329       339       349       359       369       379       389     ||404  ||   415       425       435       445         
                                                                      72|                                                                                                                                                                   247|                                                                                                                                             395|   407|                                             
                                                                       81                                                                                                                                                                    251                                                                                                                                              401    409
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FW8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FW8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FW8)

(-) Gene Ontology  (11, 11)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O53665_MYCTO | O53665: 3m1l 3q6i 3v1t 3v1u

(-) Related Entries Specified in the PDB File

3v1t