4FVS - JenaLib

Title :   CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BDI_3050) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.70 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   29 Jun 12 (Deposition) - 25 Jul 12 (Release) - 25 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Putative Exported Protein With Ymcc-Like Fold, Duf 3108, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein (Bdi_3050) From Parabacteroides Distasonis Atcc 8503 At 2. 70 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	PB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BDI_3050
	Organism Scientific	:	PARABACTEROIDES DISTASONIS
	Organism Taxid	:	435591
	Strain	:	ATCC 8503

Structural Features

Chains, Units

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 22)

Asymmetric Unit (2, 22)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG C:152	BINDING SITE FOR RESIDUE CL C 301
2	AC2	SOFTWARE	LYS C:99	BINDING SITE FOR RESIDUE CL C 302
3	AC3	SOFTWARE	ARG D:152	BINDING SITE FOR RESIDUE CL D 301
4	AC4	SOFTWARE	LYS D:184 , THR F:177	BINDING SITE FOR RESIDUE CL F 301

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee....eeeeeeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhh.....eee...eee..................eeeeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs A  21 QDCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230    
                                                        50-MSE                                                      111-MSE                                        158-MSE

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee....eeeeeeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhh.....eee...eee....................eeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs B  21 QDCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230    
                                                        50-MSE                                                      111-MSE                                        158-MSE

Chain C from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee....eeeeeeeeeeeeee....eeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhhh....eee...eeee.................eeeeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs C  21 QDCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230    
                                                        50-MSE                                                      111-MSE                                        158-MSE

Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee....eeeeeeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhh.....eee...eee....................eeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee......eeeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs D  21 QDCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230    
                                                        50-MSE                                                      111-MSE                                        158-MSE

Chain E from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeee....eeeeeeeeeeeeee....eeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhh.....eee...eee..................eeeeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs E  22 DCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    31        41        51        61        71        81        91       101       111       121       131       141       151      |161       171       181       191       201       211       221       231   
                                                       50-MSE                                                      111-MSE                                        158-MSE

Chain F from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee....eeeeeeeeeeeeee....eeeeeeeeee.....eeeeeeeeeeee..eeeee.hhhhhhhhhhh.....eee...eee..................eeeeeee..eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.......eeeeeeeeee...eeeeeeeee....eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fvs F  21 QDCTFFFPQTEGTVWVRKGYDAKGNLQSVmSYQVDEVETLPSGQEVEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSKETLSYPGVVSEmNTNVDITENFINYPNPYAANFDKNNVYFDEASVKIYDKKNRKNRKDmAIKDREFIKTESITTPAGTFDCAKVKYNIATRSPKSKETITGYGYEWYSPNVGLVRTEQYDKNNVLQSYTVLEELK 234
                                    30        40        50        60        70        80        90       100       110|      120       130       140       150       160       170       180       190       200       210       220       230    
                                                        50-MSE                                                      111-MSE                                        158-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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