Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHK1
 
Authors :  Y. N. Kang, J. A. Stuckey, P. Chang, A. J. Russell
Date :  27 Jun 12  (Deposition) - 22 Aug 12  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. N. Kang, J. A. Stuckey, P. Chang, A. J. Russell
Crystal Structure Of The Chk1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE CHK1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System CommonHUMAN
    Expression System Taxid9606
    GeneCHEK1, CHK1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    StrainHUMAN
    SynonymCHK1 CHECKPOINT HOMOLOG, CELL CYCLE CHECKPOINT KINASE, CHECKPOINT KINASE-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
11HK1Ligand/Ion4-[2-(2,4-DIHYDROINDENO[1,2-C]PYRAZOL-3-YL)ETHYL]-2-METHOXYPHENOL
2GOL2Ligand/IonGLYCEROL
3IPA2Ligand/IonISOPROPYL ALCOHOL
4SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:15 , ALA A:36 , GLU A:55 , ASN A:59 , VAL A:68 , LEU A:84 , GLU A:85 , TYR A:86 , CYS A:87 , LEU A:137 , SER A:147 , ASP A:148 , PHE A:149BINDING SITE FOR RESIDUE 1HK A 301
2AC2SOFTWARELYS A:54 , ARG A:129 , THR A:153 , ARG A:162 , HOH A:433BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWARETRP A:221 , LYS A:224 , HIS A:243 , HOH A:499BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWARETYR A:173 , ALA A:200 , GLY A:204 , GLU A:205BINDING SITE FOR RESIDUE IPA A 304
5AC5SOFTWAREARG A:29 , ARG A:181 , ASN A:249 , HOH A:471BINDING SITE FOR RESIDUE IPA A 305
6AC6SOFTWAREARG A:109 , HIS A:112 , GLN A:113 , HOH A:522BINDING SITE FOR RESIDUE GOL A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FTM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:229 -Pro A:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FTM)

(-) Exons   (0, 0)

(no "Exon" information available for 4FTM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains d4ftma_ A: Cell cycle checkpoint kinase chk1                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee...eeeeee.....eeeeeee.hhhhhhhhhh........eeeeeee..eeeeeee....ee.hhhh......hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.ee..ee........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ftm A   3 VPFVEDWDLVQTLGEVQLAVNRVTEEAVAVKIVNIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLKKGAKRPRVTS 280
                                    12   ||   27        37  ||    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277   
                                        16|                40|                                                                                                                                                                                                                                     
                                         22                 51                                                                                                                                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FTM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FTM)

(-) Gene Ontology  (44, 44)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1HK  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    IPA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:229 - Pro A:230   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4ftm
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CHK1_HUMAN | O14757
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.11.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  CHK1_HUMAN | O14757
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHK1_HUMAN | O147571ia8 1nvq 1nvr 1nvs 1zlt 1zys 2ayp 2br1 2brb 2brg 2brh 2brm 2brn 2bro 2c3j 2c3k 2c3l 2cgu 2cgv 2cgw 2cgx 2e9n 2e9o 2e9p 2e9u 2e9v 2gdo 2ghg 2hog 2hxl 2hxq 2hy0 2qhm 2qhn 2r0u 2wmq 2wmr 2wms 2wmt 2wmu 2wmv 2wmw 2wmx 2x8d 2x8e 2x8i 2xey 2xez 2xf0 2ydi 2ydj 2ydk 2yer 2yex 2ym3 2ym4 2ym5 2ym6 2ym7 2ym8 2ywp 3f9n 3jvr 3jvs 3nlb 3ot3 3ot8 3pa3 3pa4 3pa5 3tkh 3tki 3u9n 4fsm 4fsn 4fsq 4fsr 4fst 4fsu 4fsw 4fsy 4fsz 4ft0 4ft3 4ft5 4ft7 4ft9 4fta 4ftc 4fti 4ftj 4ftk 4ftl 4ftn 4fto 4ftq 4ftr 4ftt 4ftu 4gh2 4hyh 4hyi 4jik 4qye 4qyf 4qyg 4qyh 4rvk 4rvl 4rvm 5dls 5f4n

(-) Related Entries Specified in the PDB File

4fsz
4fsm CRYSTAL STRUCTURE OF THE CHK1
4fsn
4fsq
4fsr
4fst
4fsu
4fsw
4fsy
4ft0
4ft1
4ft3
4ft5
4ft7
4ft9
4fta
4ftc
4fti
4ftj
4ftk
4ftl
4ftn
4fto
4ftq
4ftr
4ftt
4ftu