4FTF - JenaLib

Title :   STRUCTURE OF THE TYPE II SECRETION SYSTEM PILOTIN ASPS FROM VIBRIO CHOLERAE

Authors :   K. V. Korotkov, T. J. Evans

Date :   27 Jun 12 (Deposition) - 28 Nov 12 (Release) - 06 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym./Biol. Unit : A

Keywords :   Pilotin, Lipoprotein, Secretin, Protein Secretion, Pfamb Pb000779, Secretin Binding, Outer Membrane, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. A. Dunstan, E. Heinz, L. C. Wijeyewickrema, R. N. Pike, A. W. Purcell T. J. Evans, J. Praszkier, R. M. Robins-Browne, R. A. Strugnell, K. V. Korotkov, T. Lithgow
Assembly Of The Type Ii Secretion System Such As Found In Vibrio Cholerae Depends On The Novel Pilotin Asps.
Plos Pathog. V. 9 03117 2013
PubMed-ID: 23326233 | Reference-DOI: 10.1371/JOURNAL.PPAT.1003117

Compounds

Molecule 1 - ALTERNATE SECRETIN PATHWAY SUBUNIT S (VC395_1821, VC1703)
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 55-163
	Gene	:	VC395_1821, VC_1703
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	44104
	Strain	:	569B

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:3 , HOH A:398	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	GLU A:26 , HOH A:397 , HOH A:455	BINDING SITE FOR RESIDUE ZN A 202
3	AC3	SOFTWARE	GLN A:9 , GLU A:13 , ASN A:58 , ASP A:78 , ACT A:205 , HOH A:400 , HOH A:466	BINDING SITE FOR RESIDUE ZN A 203
4	AC4	SOFTWARE	ARG A:10 , GLN A:104 , LEU A:105 , SER A:110 , HOH A:393	BINDING SITE FOR RESIDUE ACT A 204
5	AC5	SOFTWARE	GLU A:13 , ASN A:57 , ASN A:58 , ASP A:78 , ZN A:203 , HOH A:356 , HOH A:385 , HOH A:400	BINDING SITE FOR RESIDUE ACT A 205
6	AC6	SOFTWARE	ARG A:19 , LEU A:23 , ILE A:79 , ASN A:82 , TYR A:89	BINDING SITE FOR RESIDUE ACT A 206

SS Bonds (1, 1)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
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Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...eee..eeeeeeeee..eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....eeeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4ftf A   3 GAMAEKQRNLELLAGNRASLLSTELPLEFGPLNILRATAKGSTVELMMVYNTDANNAKPTEQVLQSAVSSFCANKDIRSNLDVGISYRIQMRNTRGQLMADQLVTKESC 111
                                    12        22        32        42        52        62        72        82        92       102

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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	Cis Peptide Bonds
		Leu A:27 - Pro A:28	[ RasMol ]

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