4FSS - JenaLib

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Title :   CRYSTAL STRUCTURE OF A RAS P21 PROTEIN ACTIVATOR (RASA1) FROM HOMO SAPIENS AT 2.25 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)

Date :   27 Jun 12 (Deposition) - 18 Jul 12 (Release) - 21 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Gtpase Activating Protein, Sh3 Domain, Ras Signaling Pathway, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of A Ras P21 Protein Activator (Rasa1) From Homo Sapiens At 2. 25 A Resolution
To Be Published
PubMed: search

Molecule 1 - RAS GTPASE-ACTIVATING PROTEIN 1
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	SH3 DOMAIN RESIDUES 281-341
	Gene	:	BC033015, RASA, RASA1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GAP, GTPASE-ACTIVATING PROTEIN, RASGAP, RAS P21 PROTEIN ACTIVATOR, P120GAP

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 11)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	-1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:281 , HIS A:310 , ASP C:326	BINDING SITE FOR RESIDUE PO4 A 1001
2	AC2	SOFTWARE	LYS A:292 , ASP A:295	BINDING SITE FOR RESIDUE CL A 1002
3	AC3	SOFTWARE	ARG B:281	BINDING SITE FOR RESIDUE CL B 401
4	AC4	SOFTWARE	ASP C:295	BINDING SITE FOR RESIDUE CL C 401
5	AC5	SOFTWARE	ARG B:285 , VAL B:339 , GLY B:340 , ARG B:341 , LYS C:292 , GLU C:327	BINDING SITE FOR RESIDUE GOL C 402

(no "SS Bond" information available for 4FSS)

(no "Cis Peptide Bond" information available for 4FSS)

(no "SAP(SNP)/Variant" information available for 4FSS)

(no "PROSITE Motif" information available for 4FSS)

(no "Exon" information available for 4FSS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains d4fssa_ A: automated matches                                 SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...................eeeeeee....eeeeee.....eeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4fss A 281 RRRVRAILPYTKVPDTDEISFLKGDmFIVHNELEDGWmWVTNLRTDEQGLIVEDLVEEVG 340
                                   290       300     | 310       320       330       340
                                                   306-MSE     318-MSE

Chain B from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains d4fssb_ B: automated matches                                  SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...................eeeeeee....eeeeee.....eeeee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4fss B 281 RRRVRAILPYTKVPDTDEISFLKGDmFIVHNELEDGWmWVTNLRTDEQGLIVEDLVEEVGR 341
                                   290       300     | 310       320       330       340 
                                                   306-MSE     318-MSE

Chain C from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains d4fssc_ C: automated matches                                  SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...................eeeeeee....eeeeee....eeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4fss C 281 RRRVRAILPYTKVPDTDEISFLKGDmFIVHNELEDGWmWVTNLRTDEQGLIVEDLVEEVGR 341
                                   290       300     | 310       320       330       340 
                                                   306-MSE     318-MSE

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		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: SH3-like barrel (1035)

Superfamily: SH3-domain (369)

Family: automated matches (114)

Protein domain: automated matches (114)

Human (Homo sapiens) [TaxId: 9606] (74)

1a	d4fssa_	A:
1b	d4fssb_	B:
1c	d4fssc_	C:

(no "CATH Domain" information available for 4FSS)

(no "Pfam Domain" information available for 4FSS)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4fss)

Biological Units
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		Biological Unit 3	[ Jena3D ]

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	4fss
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	RASA1_HUMAN \| P20936
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	RASA1_HUMAN \| P20936	:	1wer 1wq1 2gqi 2gsb 2j05 2j06 2m51

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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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