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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS ENOYL-ACP REDUCTASE IN COMPLEX WITH NADP AND AFN-1252
 
Authors :  N. Kaplan, J. Yethon, E. Bardouniotis, R. Thalakada, M. Albert, D. E. Aw V. Romanov, M. Dorsey, J. Ramnauth, T. E. Clarke, M. B. Schmid, J. Berma H. W. Pauls
Date :  26 Jun 12  (Deposition) - 19 Sep 12  (Release) - 07 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Rossmann Fold, Short Chain Dehydrogenase, Nadph Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kaplan, M. Albert, D. Awrey, E. Bardouniotis, J. Berman, T. Clarke, M. Dorsey, B. Hafkin, J. Ramnauth, V. Romanov, M. B. Schmid, R. Thalakada, J. Yethon, H. W. Pauls
Mode Of Action, In Vitro Activity, And In Vivo Efficacy Of Afn-1252, A Selective Antistaphylococcal Fabi Inhibitor.
Antimicrob. Agents Chemother. V. 56 5865 2012
PubMed-ID: 22948878  |  Reference-DOI: 10.1128/AAC.01411-12

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH] FABI
    Chains: A
    EC Number: 1.3.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FABI, SAR0978
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 282458
    Strain: MRSA252
    Synonym: ENR, NADPH-DEPENDENT ENOYL-ACP REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
10WD1Ligand/Ion[[(2R,3S,4R,5R)-5-(3-AMINOCARBONYL-4H-PYRIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHYL HYDROGENPHOSPHATE
20WE1Ligand/IonN-METHYL-N-[(3-METHYL-1-BENZOFURAN-2-YL)METHYL]-3-(7-OXO-5,6,7,8-TETRAHYDRO-1,8-NAPHTHYRIDIN-3-YL)PROPANAMIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
10WD4Ligand/Ion[[(2R,3S,4R,5R)-5-(3-AMINOCARBONYL-4H-PYRIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHYL HYDROGENPHOSPHATE
20WE4Ligand/IonN-METHYL-N-[(3-METHYL-1-BENZOFURAN-2-YL)METHYL]-3-(7-OXO-5,6,7,8-TETRAHYDRO-1,8-NAPHTHYRIDIN-3-YL)PROPANAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , ILE A:14 , ALA A:15 , SER A:19 , ILE A:20 , THR A:38 , TYR A:39 , ARG A:40 , ILE A:65 , ASP A:66 , VAL A:67 , SER A:93 , ILE A:94 , ALA A:95 , ILE A:120 , THR A:145 , THR A:146 , TYR A:147 , LYS A:164 , ALA A:190 , GLY A:191 , PRO A:192 , ILE A:193 , THR A:195 , LEU A:196 , SER A:197 , 0WE A:302 , HOH A:408 , HOH A:424 , HOH A:472 , HOH A:473 , HOH A:567 , HOH A:598 , HOH A:634BINDING SITE FOR RESIDUE 0WD A 301
2AC2SOFTWAREPHE A:96 , ALA A:97 , LEU A:102 , TYR A:147 , GLN A:155 , ASN A:156 , TYR A:157 , SER A:197 , 0WD A:301 , HOH A:526BINDING SITE FOR RESIDUE 0WE A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FS3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FS3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FS3)

(-) Exons   (0, 0)

(no "Exon" information available for 4FS3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains d4fs3a_ A: automated matches                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhh...eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fs3 A   1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FS3)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        FABI_STAAR | Q6GI75: 3gns 3gnt 3gr6

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