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(-) Description

Title :  ARABIDOPSIS KCBP MOTOR DOMAIN DIMERIZED VIA REGULATORY DOMAIN
 
Authors :  M. Vinogradova
Date :  26 Jun 12  (Deposition) - 10 Jul 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinesin Motor Domain, Calmodulin Binding Motif, Motor Protein, Kcbp Interacting Calcium Binding Protein (Kic), Kinesin Dimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. V. Vinogradova, G. G. Malanina, J. S. Waitzman, S. E. Rice, R. J. Fletterick
Plant Kinesin-Like Calmodulin Binding Protein Employs Its Regulatory Domain For Dimerization.
Plos One V. 8 66669 2013
PubMed-ID: 23805258  |  Reference-DOI: 10.1371/JOURNAL.PONE.0066669

(-) Compounds

Molecule 1 - KINESIN-LIKE CALMODULIN-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 875-1260
    Gene: KCBP, ZWI, AT5G65930, K14B20.10
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: PROTEIN ZWICHEL

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3IMD4Ligand/IonIMIDAZOLE
4MG2Ligand/IonMAGNESIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:977 , ADP A:1302 , HOH A:1426 , HOH A:1427 , HOH A:1428 , HOH A:1431BINDING SITE FOR RESIDUE MG A 1301
02AC2SOFTWAREARG A:895 , ARG A:897 , PRO A:898 , GLY A:973 , SER A:974 , GLY A:975 , LYS A:976 , THR A:977 , PHE A:978 , MG A:1301 , HOH A:1426 , HOH A:1427 , HOH A:1428 , HOH A:1433BINDING SITE FOR RESIDUE ADP A 1302
03AC3SOFTWARELYS A:887 , LYS A:889 , TYR A:953 , THR A:1181 , HOH A:1419BINDING SITE FOR RESIDUE IMD A 1303
04AC4SOFTWAREGLY A:961 , ASN A:963 , MET A:1047 , ARG A:1109 , ASN A:1178 , SER A:1215 , HIS A:1217BINDING SITE FOR RESIDUE IMD A 1304
05AC5SOFTWARETYR A:962 , SER A:1215 , LYS A:1216BINDING SITE FOR RESIDUE IMD A 1305
06AC6SOFTWARESER A:1078 , GLY A:1079 , SER A:1086BINDING SITE FOR RESIDUE EDO A 1306
07AC7SOFTWARETHR B:977 , ADP B:1302 , HOH B:1401 , HOH B:1402 , HOH B:1403 , HOH B:1404BINDING SITE FOR RESIDUE MG B 1301
08AC8SOFTWAREARG B:895 , ARG B:897 , PRO B:898 , THR B:972 , GLY B:973 , SER B:974 , GLY B:975 , LYS B:976 , THR B:977 , PHE B:978 , MG B:1301 , HOH B:1403 , HOH B:1404 , HOH B:1425BINDING SITE FOR RESIDUE ADP B 1302
09AC9SOFTWARELYS B:887 , LYS B:889 , ARG B:891 , TYR B:953 , THR B:1181BINDING SITE FOR RESIDUE IMD B 1303
10BC1SOFTWARETYR B:953BINDING SITE FOR RESIDUE EDO B 1304
11BC2SOFTWAREPRO B:1030 , LYS B:1031 , ASN B:1157 , HIS B:1159BINDING SITE FOR RESIDUE EDO B 1305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FRZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys B:925 -Asp B:926

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FRZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FRZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4FRZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4frza_ A: automated matches                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhh......eeee..eeee.......eeee..eee....hhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeeeeeee....eee............eeee.....eeee....ee...hhhhhhhhhhhhh................eeeeeeeeeeee.....eeeeeeeeee.........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee.....hhhhhhhhhhhhhhhhh........eehhhhhhhhhhhhhhhh...........ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4frz A  886 MKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERVKQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKEQAGKKGEEEDLVDIEEDR 1253
                                   895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      
                                                                                                                                                                                                                                                                       1124|                                                                                                                    
                                                                                                                                                                                                                                                                        1137                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4frzb_ B: automated matches                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh...eeeeee...hhhhhhh......eeee..eeeeee...eeeeee..eee....hhhhhhhh.hhhhhhhhhh.eeeeeee.....hhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee..eeee............eeee.....eeee....eee.hhhhhhhhhhhhhh.........eeeeeeeeeeee.....eeeeeeeeee.......hhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhhhhhhhhhhh....ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4frz B  877 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKEQAGKEDLVDIEED 1252
                                   886       896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076||    1093      1103      1113      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239|        
                                                                                                                                                                                                                                 1077|                                 1122|                                                                                                1239|        
                                                                                                                                                                                                                                  1085                                  1139                                                                                                 1244
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FRZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FRZ)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys B:925 - Asp B:926   [ RasMol ]  
 

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