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(-) Description

Title :  CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-31 IN ITS REDUCED FORM AT 1.61 A
 
Authors :  K. Herzog, K. M. Hoffmann
Date :  26 Jun 12  (Deposition) - 26 Jun 13  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym./Biol. Unit :  A
Keywords :  Metallo-Beta-Lactamase Superfamily, Beta-Lactam Hydrolyzing Enzyme, Zinc Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. B. Kupper, K. Herzog, S. Bennink, P. Schlomer, P. Bogaerts, Y. Glupczynski, R. Fischer, C. Bebrone, K. M. Hoffmann
The Three-Dimensional Structure Of Vim-31 - A Metallo-Beta-Lactamase From Enterobacter Cloacae In Its Native And Oxidized Form.
Febs J. V. 282 2352 2015
PubMed-ID: 25825035  |  Reference-DOI: 10.1111/FEBS.13283

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE VIM-31
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Fragment: UNP RESIDUES 31-266
    Gene: BLAVIM-31
    Mutation: YES
    Organism Scientific: ENTEROBACTER CLOACAE
    Organism Taxid: 550
    Strain: 11236

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3OCS1Mod. Amino AcidCYSTEINESULFONIC ACID
4ZN3Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:151 , HIS A:249 , ACT A:304 , ACT A:305BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWAREHIS A:112 , HIS A:114 , HIS A:177 , HOH A:511 , HOH A:521 , HOH A:608BINDING SITE FOR RESIDUE ZN A 302
3AC3SOFTWAREASP A:116 , OCS A:196 , HIS A:238 , HOH A:512 , HOH A:521BINDING SITE FOR RESIDUE ZN A 303
4AC4SOFTWAREALA A:130 , THR A:131 , THR A:150 , HIS A:151 , HIS A:249 , ZN A:301 , ACT A:305 , HOH A:404BINDING SITE FOR RESIDUE ACT A 304
5AC5SOFTWAREALA A:130 , HIS A:151 , HIS A:249 , ASN A:252 , ZN A:301 , ACT A:304 , HOH A:477BINDING SITE FOR RESIDUE ACT A 305
6AC6SOFTWAREARG A:139BINDING SITE FOR RESIDUE CL A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FR7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FR7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FR7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FR7)

(-) Exons   (0, 0)

(no "Exon" information available for 4FR7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains d4fr7a_ A: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.....eeeeee..eeeeeeeeee..eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeehhhhhhhhhhhh.....ee.........eeee..eeee...........eeee....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fr7 A  29 GEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGcAIHELSRTSAGNVADADLAEWPTSIERIQQRYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNR 260
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258  
                                                                                                                                                                                                 196-OCS
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FR7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FR7)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

4fsb