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(-) Description

Title :  CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) Q237A MUTANT FROM HELICOBACTER PYLORI IN COMPLEX WITH SHIKIMATE
 
Authors :  W. C. Cheng, T. J. Chen, W. C. Wang
Date :  21 Jun 12  (Deposition) - 26 Dec 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  Shikimate, Dehydrogenase, Nadp Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search

(-) Compounds

Molecule 1 - SHIKIMATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AROE, HP_1249
    Mutation: YES
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Strain: 26695

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SKM1Ligand/Ion(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLICACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:16 , SER A:18 , ASN A:63 , VAL A:64 , THR A:65 , LYS A:69 , ASN A:90 , ASP A:105 , TYR A:210 , HOH A:623 , HOH A:627BINDING SITE FOR RESIDUE SKM A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FOS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asn A:11 -Pro A:12
2Leu A:66 -Pro A:67

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FOS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FOS)

(-) Exons   (0, 0)

(no "Exon" information available for 4FOS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains d4fosa1 A:1-104 automated matches                                                                       d4fosa2 A:105-263 automated matches                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee......hhhhhhhh.eeeeee...hhhhhhhhh.ee.hhhhhh....eeeee..eeeee.hhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeeee.....hhhhhhhhh.eee.........eeee............hhhhhhhhhhhh.eeee......hhhhhhhhhh...ee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fos A   1 MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVF 263
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FOS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FOS)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  AROE_HELPY | P56119
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  1.1.1.25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROE_HELPY | P56119: 3phg 3phh 3phi 3phj 4foo 4fpx 4fq8 4fr5 4fsh

(-) Related Entries Specified in the PDB File

3phg CRYSTAL STRUCTURE OF THE SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI
3phh SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN COMPLEX WITH SHIKIMATE
3phi SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN COMPLEX WITH SHIKIMATE AND NADPH
3phj SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN COMPLEX WITH 3-DEHYDROSHIKIMATE
4foo
4fpx
4fq8
4fr5