4FO0 - JenaLib

Title :   HUMAN ACTIN-RELATED PROTEIN ARP8 IN ITS ATP-BOUND STATE

Authors :   C. B. Gerhold, K. Lakomek, F. U. Seifert, K. -P. Hopfner

Date :   20 Jun 12 (Deposition) - 26 Sep 12 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Actin-Related Protein, Chromatin Remodeling, Nucleosomes, Nucleus, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. B. Gerhold, D. D. Winkler, K. Lakomek, F. U. Seifert, S. Fenn, B. Kessler, G. Witte, K. Luger, K. P. Hopfner
Structure Of Actin-Related Protein 8 And Its Contribution T Nucleosome Binding.
Nucleic Acids Res. V. 40 11036 2012
PubMed-ID: 22977180 | Reference-DOI: 10.1093/NAR/GKS842

Compounds

Molecule 1 - ACTIN-RELATED PROTEIN 8
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28
	Expression System Strain	:	ROSETTA 2 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HARP8, INO80 COMPLEX SUBUNIT N

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 11)

Asymmetric Unit (4, 11)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CL	1	Ligand/Ion	CHLORIDE ION
3	GOL	8	Ligand/Ion	GLYCEROL
4	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	8	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 18)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	16	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:288 , ATP A:702 , HOH A:844 , HOH A:901 , HOH A:905 , HOH A:907	BINDING SITE FOR RESIDUE MG A 701
02	AC2	SOFTWARE	GLY A:54 , SER A:55 , THR A:56 , THR A:57 , ARG A:59 , GLY A:285 , ASP A:286 , GLN A:287 , LYS A:288 , GLY A:311 , GLN A:344 , LYS A:347 , GLU A:348 , GLY A:539 , GLY A:540 , GLY A:541 , MET A:543 , PHE A:544 , MG A:701 , HOH A:809 , HOH A:813 , HOH A:814 , HOH A:815 , HOH A:844 , HOH A:845 , HOH A:901 , HOH A:930	BINDING SITE FOR RESIDUE ATP A 702
03	AC3	SOFTWARE	GLN A:105 , PRO A:395 , ALA A:396 , PHE A:398 , GLY A:399 , ILE A:400 , MET A:405 , ALA A:508	BINDING SITE FOR RESIDUE GOL A 703
04	AC4	SOFTWARE	GLY A:153 , ASN A:154 , LYS A:155 , TYR A:173 , HOH A:823 , HOH A:940	BINDING SITE FOR RESIDUE GOL A 704
05	AC5	SOFTWARE	GLN A:107 , LEU A:110 , LYS A:111 , ASP A:114 , ASP A:149 , HIS A:150 , HOH A:871	BINDING SITE FOR RESIDUE GOL A 705
06	AC6	SOFTWARE	TYR A:329 , GLU A:331 , GLN A:333 , ASP A:339 , HOH A:939	BINDING SITE FOR RESIDUE GOL A 706
07	AC7	SOFTWARE	PHE A:350 , HIS A:363 , LYS A:385	BINDING SITE FOR RESIDUE GOL A 707
08	AC8	SOFTWARE	TRP A:156 , THR A:157 , ASN A:158 , THR A:159 , SER A:160 , ASN A:175 , ASP A:178 , HOH A:919	BINDING SITE FOR RESIDUE GOL A 708
09	AC9	SOFTWARE	PRO A:176 , THR A:335 , ASN A:336 , LYS A:337 , MET A:338 , HOH A:842 , HOH A:929	BINDING SITE FOR RESIDUE GOL A 709
10	BC1	SOFTWARE	GLN A:44 , SER A:45 , ALA A:593 , CYS A:594	BINDING SITE FOR RESIDUE GOL A 710
11	BC2	SOFTWARE	MET A:579 , ASP A:580 , LYS A:587	BINDING SITE FOR RESIDUE CL A 711

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeee..eeeeee....eeeeee..eeeee......eeeeee.........hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh.eeeeeee..............eeeehhhhhh......eeeee................hhhhhhhhhhhhhhhhhhh....hhhhhh.eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhhhhhh...eeeeeee....eeeeeee........eeee..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.........eeeeeee......eeeeeeee.hhhhhhhhhhh............eeee..hhhhh...hhhhhhhhhhh...hhhhhhhhheeeee........hhhhhhhhhhhhh.hhhhhhh..eeeee........hhhhhhhhhhhh.hhhhhh...hhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fo0 A  32 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHSLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW 624
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       502       512       522       532       542       552       562       572       582       592       602       612       622  
                                                                                                                                                                                                                                                                                                                                                                                                                    410|                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                     502

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

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