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(-) Description

Title :  ELONGATION FACTOR G 1 (PSEUDOMONAS AERUGINOSA) IN COMPLEX WITH ARGYRIN B
 
Authors :  C. A. Kirby, D. Palestrant
Date :  19 Jun 12  (Deposition) - 26 Sep 12  (Release) - 26 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Elongation Factor, Translation, Translation-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nyfeler, D. Hoepfner, D. Palestrant, C. A. Kirby, L. Whitehead, R. Yu, G. Deng, R. E. Caughlan, A. L. Woods, A. K. Jones, S. W. Barnes, J. R. Walker, S. Gaulis, E. Hauy, S. M. Brachmann, P. Krastel, C. Studer R. Riedl, D. Estoppey, T. Aust, N. R. Movva, Z. Wang, M. Salcius, G. A. Michaud, G. Mcallister, L. O. Murphy, J. A. Tallarico, C. J. Wilson, C. R. Dean
Identification Of Elongation Factor G As The Conserved Cellular Target Of Argyrin B.
Plos One V. 7 42657 2012
PubMed-ID: 22970117  |  Reference-DOI: 10.1371/JOURNAL.PONE.0042657

(-) Compounds

Molecule 1 - ELONGATION FACTOR G 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FUSA, FUSA1, PA4266
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: EF-G 1
 
Molecule 2 - ARGYRIN B
    Chains: B
    Organism Scientific: ACTINOPLANES SP.
    Organism Taxid: 1871
    Strain: 86317

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 6)

Asymmetric/Biological Unit (6, 6)
No.NameCountTypeFull Name
10UO1Mod. Amino Acid4-METHOXY-L-TRYPTOPHAN
2BB91Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
3DAL1Mod. Amino AcidD-ALANINE
4DBB1Mod. Amino AcidD-ALPHA-AMINOBUTYRIC ACID
5DHA1Mod. Amino Acid2-AMINO-ACRYLIC ACID
6SAR1Mod. Amino AcidSARCOSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:413 , PRO A:414 , SER A:417 , ARG A:446 , LYS A:448 , ASP A:450 , ILE A:457 , SER A:459 , PRO A:486 , GLN A:487 , VAL A:488 , ALA A:489 , PRO A:618 , MET A:620 , LEU A:663 , MET A:685 , PHE A:687BINDING SITE FOR CHAIN B OF ARGYRIN B

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FN5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FN5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FN5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FN5)

(-) Exons   (0, 0)

(no "Exon" information available for 4FN5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:670
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeee.....hhhhhhhhhhhhhhhhhhh..eeeeee.........eeeeee.......hhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhh..eee.eeee.......eeee....eeeeee....eeee...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhh........ee..........ee........eeeeee...........eeeeee..ee..................ee........ee.ee....eeee..........eee.............eeeee......hhhhhhhhhhhhhhhh...eeeee....eeeeee.hhhhhhhhhhhhhh...............eee.....eeeeeeeeeee..eeeeeeeeeeee...........eeeeee......hhhhhhhhhhhhhhhhhhh........eeeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..hhhhhhhhhhhhh.eeeeeee...eeeeeeeee.hhhhhhhhhhhhhh....eee..eeeeee.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn5 A   3 RTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILEPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDKGNITEGLVFENEVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 705
                                    12        22        32       |66        76        86        96       106       116       126       136       146       156       166       176       186       198       208       218       228       238       248       258       268       278       288       298  ||   309       319       329       339       349       359       369       379       389       399       413       423       433       443       453       463       473       483       493       503       513       523    || 534       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705
                                                                40|                                                                                                                               195|                                                                                                    301|                                                                                                     407|                                                                                                                 528|          543|                                                                                                                                                                
                                                                 65                                                                                                                                198                                                                                                     303                                                                                                      412                                                                                                                  530           545                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 4fn5 B   1 xcWwGxsg   8
                            || | |||
                            1-DAL|||
                             2-BB9||
                               4-0UO
                                 6-DBB
                                  7-DHA
                                   8-SAR
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FN5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FN5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FN5)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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