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(-) Description

Title :  SHORT-CHAIN NAD(H)-DEPENDENT DEHYDROGENASE/REDUCTASE FROM SULFOLOBUS ACIDOCALDARIUS
 
Authors :  A. Pennacchio, V. Sannino, G. Sorrentino, M. Rossi, C. A. Raia, L. Espos
Date :  19 Jun 12  (Deposition) - 15 Aug 12  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nadh-Binding, Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Pennacchio, V. Sannino, G. Sorrentino, M. Rossi, C. A. Raia, L. Esposito
Biochemical And Structural Characterization Of Recombinant Short-Chain Nad(H)-Dependent Dehydrogenase/Reductase From Sulfolobus Acidocaldarius Highly Enantioselective On Diaryl Diketone Benzil.
Appl. Microbiol. Biotechnol. V. 97 3949 2013
PubMed-ID: 22805786  |  Reference-DOI: 10.1007/S00253-012-4273-Z

(-) Compounds

Molecule 1 - SHORT CHAIN DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SAADH2, SACI_1232
    Organism Scientific: SULFOLOBUS ACIDOCALDARIUS
    Organism Taxid: 330779
    Strain: DSM 639

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO41Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:15 , SER A:18 , GLY A:19 , ILE A:20 , GLU A:39 , LEU A:40 , ARG A:44 , ALA A:64 , ASP A:65 , VAL A:66 , ASN A:92 , ALA A:93 , GLY A:94 , ILE A:95 , THR A:143 , ALA A:144 , SER A:145 , TYR A:158 , LYS A:162 , PRO A:188 , GLY A:189 , VAL A:191 , THR A:193 , ASN A:194 , ILE A:195 , GOL A:502 , HOH A:606 , HOH A:620 , HOH A:631 , HOH A:658BINDING SITE FOR RESIDUE NAD A 501
02AC2SOFTWAREMET A:96 , TYR A:158 , GLY A:189 , GLY A:196 , NAD A:501 , HOH A:677BINDING SITE FOR RESIDUE GOL A 502
03AC3SOFTWAREGLY B:15 , SER B:18 , GLY B:19 , ILE B:20 , GLU B:39 , LEU B:40 , ARG B:44 , ALA B:64 , ASP B:65 , VAL B:66 , ASN B:92 , ALA B:93 , GLY B:94 , THR B:143 , ALA B:144 , TYR B:158 , LYS B:162 , PRO B:188 , GLY B:189 , VAL B:191 , THR B:193 , ASN B:194 , ILE B:195 , HOH B:605 , HOH B:656 , HOH B:721 , HOH B:745 , HOH B:748BINDING SITE FOR RESIDUE NAD B 501
04AC4SOFTWARELYS A:212 , ALA B:173 , ALA B:174 , GLY B:177 , ASP B:178 , ASN B:242 , SER D:217 , ARG D:219 , GLY D:250 , LEU D:255BINDING SITE FOR RESIDUE GOL B 503
05AC5SOFTWAREGLY C:15 , GLY C:17 , SER C:18 , GLY C:19 , ILE C:20 , GLU C:39 , LEU C:40 , ARG C:44 , ALA C:64 , ASP C:65 , VAL C:66 , ASN C:92 , ALA C:93 , GLY C:94 , THR C:143 , ALA C:144 , SER C:145 , TYR C:158 , LYS C:162 , PRO C:188 , GLY C:189 , VAL C:191 , THR C:193 , ASN C:194 , ILE C:195 , GOL C:502 , HOH C:638 , HOH C:640 , HOH C:659 , HOH C:773BINDING SITE FOR RESIDUE NAD C 501
06AC6SOFTWAREMET C:96 , TYR C:158 , GLY C:189 , GLY C:196 , NAD C:501 , HOH C:665 , HOH C:773BINDING SITE FOR RESIDUE GOL C 502
07AC7SOFTWARESER C:106 , GLU C:108 , LEU C:109 , ARG C:112BINDING SITE FOR RESIDUE SO4 C 503
08AC8SOFTWAREGLY D:15 , SER D:18 , GLY D:19 , ILE D:20 , GLU D:39 , LEU D:40 , ARG D:44 , ALA D:64 , ASP D:65 , VAL D:66 , ASN D:92 , ALA D:93 , GLY D:94 , THR D:143 , ALA D:144 , SER D:145 , TYR D:158 , LYS D:162 , PRO D:188 , GLY D:189 , VAL D:191 , THR D:193 , ASN D:194 , ILE D:195 , GOL D:502 , HOH D:612 , HOH D:636 , HOH D:666 , HOH D:669BINDING SITE FOR RESIDUE NAD D 501
09AC9SOFTWAREMET D:96 , SER D:145 , TYR D:158 , GLY D:189 , GLY D:196 , LEU D:197 , NAD D:501 , HOH D:631 , HOH D:669 , HOH D:750BINDING SITE FOR RESIDUE GOL D 502
10BC1SOFTWAREGLU D:104 , HOH D:627BINDING SITE FOR RESIDUE GOL D 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FN4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FN4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FN4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FN4)

(-) Exons   (0, 0)

(no "Exon" information available for 4FN4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4fn4a_ A: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn4 A   2 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLTVL 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    


Chain B from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4fn4b_ B: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn4 B   2 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLTVL 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    


Chain C from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4fn4c_ C: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn4 C   2 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLTVL 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    


Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4fn4d_ D: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..............hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn4 D   2 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLTVL 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FN4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FN4)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fn4
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