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(-) Description

Title :  CID OF HUMAN RPRD2
 
Authors :  Z. Ni, C. Xu, W. Tempel, M. El Bakkouri, P. Loppnau, X. Guo, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, J. F. Greenblatt, Structural Consortium (Sgc)
Date :  14 Jun 12  (Deposition) - 15 Aug 12  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics Consortium, Sgc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Ni, C. Xu, X. Guo, G. O. Hunter, O. V. Kuznetsova, W. Tempel, E. Marcon G. Zhong, H. Guo, W. H. Kuo, J. Li, P. Young, J. B. Olsen, C. Wan, P. Loppnau, M. El Bakkouri, G. A. Senisterra, H. He, H. Huang, S. S. Sidhu, A. Emili, S. Murphy, A. L. Mosley, C. H. Arrowsmith, J. Min, J. F. Greenblatt
Rprd1A And Rprd1B Are Human Rna Polymerase Ii C-Terminal Domain Scaffolds For Ser5 Dephosphorylation.
Nat. Struct. Mol. Biol. V. 21 686 2014
PubMed-ID: 24997600  |  Reference-DOI: 10.1038/NSMB.2853

(-) Compounds

Molecule 1 - REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15 MHL
    Expression System Strain: BL 21
    Expression System Taxid: 562
    Gene: RPRD2, KIAA0460, HSPC099
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1PR2Ligand/IonPRASEODYMIUM ION
2SO42Ligand/IonSULFATE ION
3UNX5Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1PR-1Ligand/IonPRASEODYMIUM ION
2SO44Ligand/IonSULFATE ION
3UNX10Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:89 , ARG A:97 , ARG A:130 , HOH A:322 , HOH A:342 , HOH A:352BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREARG A:90 , LYS A:91 , ARG A:122 , HOH A:331BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREGLU A:24 , ASP A:28 , GLU A:128 , GLU A:135BINDING SITE FOR RESIDUE PR A 203
4AC4SOFTWAREGLU A:24 , ASP A:102 , GLU A:135BINDING SITE FOR RESIDUE PR A 204

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4flb A  19 SAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMIVALREALSTTF 149
                                    28        38        48        58        68        78        88        98       108       118       128       138       148
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

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4fld