4FLB - JenaLib

Title :   CID OF HUMAN RPRD2

Authors :   Z. Ni, C. Xu, W. Tempel, M. El Bakkouri, P. Loppnau, X. Guo, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, J. F. Greenblatt, Structural Consortium (Sgc)

Date :   14 Jun 12 (Deposition) - 15 Aug 12 (Release) - 20 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Structural Genomics Consortium, Sgc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Ni, C. Xu, X. Guo, G. O. Hunter, O. V. Kuznetsova, W. Tempel, E. Marcon G. Zhong, H. Guo, W. H. Kuo, J. Li, P. Young, J. B. Olsen, C. Wan, P. Loppnau, M. El Bakkouri, G. A. Senisterra, H. He, H. Huang, S. S. Sidhu, A. Emili, S. Murphy, A. L. Mosley, C. H. Arrowsmith, J. Min, J. F. Greenblatt
Rprd1A And Rprd1B Are Human Rna Polymerase Ii C-Terminal Domain Scaffolds For Ser5 Dephosphorylation.
Nat. Struct. Mol. Biol. V. 21 686 2014
PubMed-ID: 24997600 | Reference-DOI: 10.1038/NSMB.2853

Compounds

Molecule 1 - REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15 MHL
	Expression System Strain	:	BL 21
	Expression System Taxid	:	562
	Gene	:	RPRD2, KIAA0460, HSPC099
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	PR	2	Ligand/Ion	PRASEODYMIUM ION
2	SO4	2	Ligand/Ion	SULFATE ION
3	UNX	5	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 1 (2, 14)

No.	Name	Count	Type	Full Name
1	PR	-1	Ligand/Ion	PRASEODYMIUM ION
2	SO4	4	Ligand/Ion	SULFATE ION
3	UNX	10	Ligand/Ion	UNKNOWN ATOM OR ION

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:89 , ARG A:97 , ARG A:130 , HOH A:322 , HOH A:342 , HOH A:352	BINDING SITE FOR RESIDUE SO4 A 201
2	AC2	SOFTWARE	ARG A:90 , LYS A:91 , ARG A:122 , HOH A:331	BINDING SITE FOR RESIDUE SO4 A 202
3	AC3	SOFTWARE	GLU A:24 , ASP A:28 , GLU A:128 , GLU A:135	BINDING SITE FOR RESIDUE PR A 203
4	AC4	SOFTWARE	GLU A:24 , ASP A:102 , GLU A:135	BINDING SITE FOR RESIDUE PR A 204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4flb A  19 SAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMIVALREALSTTF 149
                                    28        38        48        58        68        78        88        98       108       118       128       138       148

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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	Ligands, Modified Residues, Ions
		PR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNX	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
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Biological Unit
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		Biological Unit 1	[ Jena3D ]

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	4flb
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Description