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(-) Description

Title :  STRUCTURE OF UNLIGANDED AND REDUCTIVELY METHYLATED FHUD2 FROM STAPHYLOCOCCUS AUREUS
 
Authors :  K. J. Podkowa, D. E. Heinrichs, B. H. Shilton
Date :  13 Jun 12  (Deposition) - 19 Jun 13  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Class Iii Solute Binding Protein, Membrane Protein, Transport Of Hydroxamate Siderophores, Reductive Methylation Of Lysyl Residues, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. J. Podkowa, L. A. Briere, D. E. Heinrichs, B. H. Shilton
Crystal And Solution Structure Analysis Of Fhud2 From Staphylococcus Aureus In Multiple Unliganded Conformations And Bound To Ferrioxamine-B.
Biochemistry V. 53 2017 2014
PubMed-ID: 24606332  |  Reference-DOI: 10.1021/BI401349D

(-) Compounds

Molecule 1 - SIMILAR TO FERRIC HYDROXAMATE RECEPTOR 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-FHUD2(DELTA)43
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 44-301
    Gene: SAV2284
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 96)

Asymmetric Unit (2, 96)
No.NameCountTypeFull Name
1MLY88Mod. Amino AcidN-DIMETHYL-LYSINE
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 48)
No.NameCountTypeFull Name
1MLY44Mod. Amino AcidN-DIMETHYL-LYSINE
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 48)
No.NameCountTypeFull Name
1MLY44Mod. Amino AcidN-DIMETHYL-LYSINE
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4FKM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FKM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FKM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FKM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FKM)

(-) Exons   (0, 0)

(no "Exon" information available for 4FKM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhh..eeeeee.hhhhhhhhhhhh....ee...hhhhhhhh...eeee.....hhhhhh....eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..eeeee......hhhhhhh....eehhhhhhhhhh..eee.hhhhhhhh...eeee.......hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fkm A  47 PkRIAVVAPTYAGGLkkLGANIVAVNQQVDQSkVLkDkFkGVTkIGDGDVEkVAkEkPDLIIVYSTDkDIkkYQkVAPTVVVDYNkHkYLEQQEmLGkIVGkEDkVkAWkkDWEETTAkDGkEIkkAIGQDATVSLFDEFDkkLYTYGDNWGRGGEVLYQAFGLkmQPEQQkLTAkAGWAEVkQEEIEkYAGDYIVSTSEGkPTPGYESTNmWkNLkATkEGHIVkVDAGTYWYNDPYTLDFmRkDLkEkLIkAAk 302
                             |      56     || 66        76  |  | |86   |    96 |  | |106       116||  |  126     | 136    |  146 |  | |156|      166 |  || 176       186 ||    196       206    || 216 |   | 226  |    236       246 |     256 | |  |266     | 276       286  | |  296  |  |
                             |            62-MLY           79-MLY| |   |      98-MLY|        114-MLY  |        132-MLY    |  |   |  | |  ||     165-MLY ||             188-MLY                211-MLY  |   |      |     |          248-MLY   258-MSE|  |     |              289-MSE| |  |  |
                            48-MLY         63-MLY             82-MLY   |        101-MLY         117-MLY          134-MLY  |  |   |  | |  ||        168-MLY              189-MLY                212-MSE |   |      |     |                      260-MLY |     |                291-MLY|  |  |
                                                                84-MLY |          103-MLY        118-MLY                141-MSE  |  | |  ||           171-MLY                                        218-MLY      |     |                         263-MLY    |                   294-MLY|  |
                                                                  86-MLY                            121-MLY                144-MLY  | |  ||            172-MLY                                           222-MLY  |     |                            266-MLY |                     296-MLY |
                                                                      90-MLY                                                   148-MLY|  ||                                                                     229-MLY |                                  272-MLY                    299-MLY
                                                                                                                                  151-MLY||                                                                           235-MLY                                                            302-MLY
                                                                                                                                    153-MLY                                                                                                                                                 
                                                                                                                                       156-MLY                                                                                                                                              
                                                                                                                                        157-MLY                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhh..eeeeee.hhhhhhhhhhhh....ee...hhhhhhhh...eeee.....hhhhhh....eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee....eeee......hhhhhhh......hhhhhhhhhh..eeee...hhhhhh..eeee.......hhhhhhhhhhhhhhhhhh.eee...hhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fkm B  46 DPkRIAVVAPTYAGGLkkLGANIVAVNQQVDQSkVLkDkFkGVTkIGDGDVEkVAkEkPDLIIVYSTDkDIkkYQkVAPTVVVDYNkHkYLEQQEmLGkIVGkEDkVkAWkkDWEETTAkDGkEIkkAIGQDATVSLFDEFDkkLYTYGDNWGRGGEVLYQAFGLkmQPEQQkLTAkAGWAEVkQEEIEkYAGDYIVSTSEGkPTPGYESTNmWkNLkATkEGHIVkVDAGTYWYNDPYTLDFmRkDLkEkLIkAAk 302
                              |     55      ||65        75   |  | 85|   |   95  |  | 105       115 ||  | 125      |135     | 145  |  | 155||     165  |  ||175       185  ||   195       205     ||215  |   |225   |   235       245  |    255  | |  265|     |275       285   | | 295|  |  |
                              |            62-MLY           79-MLY| |   |      98-MLY|        114-MLY  |        132-MLY    |  |   |  | |  ||     165-MLY ||             188-MLY                211-MLY  |   |      |     |          248-MLY   258-MSE|  |     |              289-MSE| |  |  |
                             48-MLY         63-MLY             82-MLY   |        101-MLY         117-MLY          134-MLY  |  |   |  | |  ||        168-MLY              189-MLY                212-MSE |   |      |     |                      260-MLY |     |                291-MLY|  |  |
                                                                 84-MLY |          103-MLY        118-MLY                141-MSE  |  | |  ||           171-MLY                                        218-MLY      |     |                         263-MLY    |                   294-MLY|  |
                                                                   86-MLY                            121-MLY                144-MLY  | |  ||            172-MLY                                           222-MLY  |     |                            266-MLY |                     296-MLY |
                                                                       90-MLY                                                   148-MLY|  ||                                                                     229-MLY |                                  272-MLY                    299-MLY
                                                                                                                                   151-MLY||                                                                           235-MLY                                                            302-MLY
                                                                                                                                     153-MLY                                                                                                                                                 
                                                                                                                                        156-MLY                                                                                                                                              
                                                                                                                                         157-MLY
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FKM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FKM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FKM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4FKM)

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(-) Related Entries Specified in the PDB File

4fil UNMETHYLATED FHUD2 FROM STAPHYLOCOCCUS AUREUS BOUND TO FERRIOXAMINEB