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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CYP46A1 P450 WITH BICALUTAMIDE BOUND
 
Authors :  C. D. Stout, I. A. Pikuleva, N. Mast
Date :  08 Jun 12  (Deposition) - 09 Jan 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Cytochrome P450, Cyp46A1, Bicalutamide Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Mast, W. Zheng, C. D. Stout, I. A. Pikuleva
Binding Of A Cyano- And Fluoro-Containing Drug Bicalutamide To Cytochrome P450 46A1: Unusual Features And Spectral Response.
J. Biol. Chem. V. 288 4613 2013
PubMed-ID: 23288837  |  Reference-DOI: 10.1074/JBC.M112.438754

(-) Compounds

Molecule 1 - CHOLESTEROL 24-HYDROXYLASE
    Chains: A
    EC Number: 1.14.13.98
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC18
    Expression System Strain: DH5ALPHA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CYP46, CYP46A1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CH24H, CYTOCHROME P450 46A1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
10U91Ligand/IonS-BICALUTAMIDE
21981Ligand/IonR-BICALUTAMIDE
3GOL1Ligand/IonGLYCEROL
4HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:104 , TYR A:109 , LEU A:125 , VAL A:126 , TRP A:134 , ARG A:138 , PHE A:299 , ALA A:302 , GLY A:303 , THR A:306 , SER A:307 , HIS A:310 , ALA A:367 , THR A:370 , PRO A:429 , PHE A:430 , ARG A:435 , SER A:436 , CYS A:437 , ILE A:438 , GLY A:439 , PHE A:442 , ALA A:443 , 0U9 A:601 , 198 A:602 , HOH A:705 , HOH A:724 , HOH A:769BINDING SITE FOR RESIDUE HEM A 600
2AC2SOFTWAREPHE A:80 , LEU A:112 , ILE A:222 , ARG A:226 , ALA A:302 , THR A:306 , TRP A:368 , GLY A:369 , PHE A:371 , GLU A:472 , ALA A:474 , THR A:475 , HEM A:600 , HOH A:705BINDING SITE FOR RESIDUE 0U9 A 601
3AC3SOFTWAREPHE A:80 , ILE A:222 , ARG A:226 , ALA A:302 , THR A:306 , TRP A:368 , GLY A:369 , PHE A:371 , GLU A:472 , ALA A:474 , THR A:475 , HEM A:600 , HOH A:705BINDING SITE FOR RESIDUE 198 A 602
4AC4SOFTWARETHR A:100 , LYS A:101BINDING SITE FOR RESIDUE GOL A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FIA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FIA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FIA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FIA)

(-) Exons   (0, 0)

(no "Exon" information available for 4FIA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh......hhhhhhhhhee..ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eehhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeee...eee..eee...eeeeeehhhhhh...........hhhhhh..............hhhhh..hhhhhhhhhhhhhhhhhhheeeee.......eee...eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fia A  57 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKAEEGAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQRFGLQEQATLKPLDPVLCTLRPR 489
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226 ||    243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483      
                                                                                                                                                                                                     228|                                                                                                                                                                                                                                                             
                                                                                                                                                                                                      236
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FIA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FIA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FIA)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP46A_HUMAN | Q9Y6A2: 2q9f 2q9g 3mdm 3mdr 3mdt 3mdv 4enh 4j14

(-) Related Entries Specified in the PDB File

2q9f CYP46A1 WITH 24-OH CHOLESTEROL