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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE MAOC-LIKE (MONOAMINE OXIDASE-LIKE) PROTEIN, SIMILAR TO NODN FROM SINORHIZO BIUM MELILOTI 1021
 
Authors :  V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Kh R. Seidel, J. B. Bonanno, S. C. Almo, New York Structural Genomics Consortium (Nysgrc)
Date :  01 Jun 12  (Deposition) - 13 Jun 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,D,E,F,I,J  (1x)
Biol. Unit 2:  B,C,G,H,K,L  (1x)
Keywords :  Structural Genomics, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgrc, Oxidase, Psi- Biology, New York Structural Genomics Research Consortium, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Putative Maoc-Like (Monoamine Oxidase-Like) Protein, Similar To Nodn From Sinorhizo Bium Meliloti 1021
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OXIDASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 1.4.3.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON+RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RB0689, SM_B21110
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021
    Synonym: PUTATIVE MAOC-LIKE (MONOAMINE OXIDASE-LIKE) PROTEIN, SIMILAR TO NODN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A  DEF  IJ  
Biological Unit 2 (1x):  BC   GH  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 33)

Asymmetric Unit (2, 33)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN H:13 , ALA H:108 , LYS H:109 , HOH H:307 , ARG J:101BINDING SITE FOR RESIDUE CL H 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FFU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FFU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FFU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FFU)

(-) Exons   (0, 0)

(no "Exon" information available for 4FFU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains d4ffua_ A: automated matches                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.......hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhh.......eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu A  -6 NLYFQSmmSEQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKP 148
                                  || 3        13        23        33        43|       53        63        73        83        93       103       113       123       133       143     
                                  0-MSE                                      44-MSE             63-MSE                                                                                 
                                   1-MSE                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4ffub_ B: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhh.......eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffu B  -1 SmmSEQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKP 148
                             ||      8        18        28        38     |  48        58    |   68        78        88        98       108       118       128       138       148
                             0-MSE                                      44-MSE             63-MSE                                                                                 
                              1-MSE                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4ffuc_ C: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffu C   4 QTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKPEGTIQ 153
                                    13        23        33        43|       53        63        73        83        93       103       113       123       133       143       153
                                                                   44-MSE             63-MSE                                                                                      


Chain D from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains d4ffud_ D: automated matches                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhh.hhhhhh.......hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu D   3 EQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKPE 149
                                    12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142       
                                                                    44-MSE             63-MSE                                                                                  


Chain E from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4ffue_ E: automated matches                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu E   3 EQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKPEGTIQ 153
                                    12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142       152 
                                                                    44-MSE             63-MSE                                                                                      


Chain F from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4ffuf_ F: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu F   3 EQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERK 147
                                    12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142     
                                                                    44-MSE             63-MSE                                                                                


Chain G from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4ffug_ G: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu G   3 EQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERK 147
                                    12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142     
                                                                    44-MSE             63-MSE                                                                                


Chain H from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4ffuh_ H: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh........hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffu H  -7 ENLYFQSmmSEQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKP 148
                                   ||2        12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142      
                                   0-MSE                                      44-MSE             63-MSE                                                                                 
                                    1-MSE                                                                                                                                               


Chain I from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains d4ffui_ I: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh........hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu I  -7 ENLYFQSmmSEQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKPE 149
                                   ||2        12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142       
                                   0-MSE                                      44-MSE             63-MSE                                                                                  
                                    1-MSE                                                                                                                                                


Chain J from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains d4ffuj_ J: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu J   4 QTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVER 146
                                    13        23        33        43|       53        63        73        83        93       103       113       123       133       143   
                                                                   44-MSE             63-MSE                                                                               


Chain K from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains d4ffuk_ K: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeeeeeeeee..eeeeeeeee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu K   4 QTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEGRVVERCEVINQRGEVVLAADHILIVER 146
                                    13        23        33        43|       53        63        73        83        93       103      |121       131       141     
                                                                   44-MSE             63-MSE                                        110|                           
                                                                                                                                     119                           


Chain L from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4fful_ L: automated matches                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh....eee...ee.hhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhh........eeeeeeeeeee........eeeeeeeeeeeee......eeeeeeeeeee.....eeeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffu L   3 EQTIYYEDYEQGHVRLTSGRTITETDFVVHAGHTGDFFPHHmDAEFAKTLPGGQRIAHGTmIFSIGVGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVERKPEGTIQ 153
                                    12        22        32        42 |      52        62|       72        82        92       102       112       122       132       142       152 
                                                                    44-MSE             63-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FFU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FFU)

(-) Gene Ontology  (2, 2)

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