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(-) Description

Title :  THE CRYSTAL STRUCTURE OF SPDHBPS FROM S.PNEUMONIAE
 
Authors :  D. Wang
Date :  01 Jun 12  (Deposition) - 17 Jul 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (2x)
Keywords :  Barrel Structure, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Wang
The Crystal Structure Of Spdhbps From S. Pneumoniae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBBA
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 1-210
    Gene: RIBAB, RIBBA, SP_0176
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
2SO46Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:83 , ARG A:139 , GLY A:141 , HIS A:142 , THR A:143 , GOL A:308BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWARELYS A:15 , ARG A:17 , HOH A:439BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREMET A:1BINDING SITE FOR RESIDUE SO4 A 303
4AC4SOFTWARETHR A:41 , LEU A:105 , ARG A:108 , HOH A:429BINDING SITE FOR RESIDUE GOL A 304
5AC5SOFTWAREALA A:12 , ARG A:17 , LEU A:18 , ASN A:185 , ILE A:186 , PRO A:187 , HOH A:426BINDING SITE FOR RESIDUE GOL A 305
6AC6SOFTWAREARG A:173 , THR A:174BINDING SITE FOR RESIDUE GOL A 306
7AC7SOFTWARETHR A:83 , ARG A:139BINDING SITE FOR RESIDUE GOL A 307
8AC8SOFTWARECYS A:57 , THR A:83 , HIS A:125 , GLU A:163 , SO4 A:301 , HOH A:520BINDING SITE FOR RESIDUE GOL A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FFJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:3 -Arg A:4
2Arg A:122 -Pro A:123

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FFJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FFJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4FFJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains d4ffja_ A: automated matches                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh...eeee......eeeeee....hhhhhhhhhhhh.....eeehhhhhhhh.............eee.......hhhhhhhhhhhhh....hhh.eeeeeee.eee...hhhhh..hhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh...eeehhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffj A   1 MEYRKIQEALEALQKGRLVLVIDDKDNEGDLICSAQAATTENVNFMATYAKGLICMPMSESLANQLMLSPMVETAFTVSIDYKETTTGISAEERGLTARMCVAEDITPSDFRRPGHMFPLIAKKGGVLERNGHTEATVDLLKLAGLKECGLCCEIMNHDGKMMRTDDLIQFSKKHNIPLITIKELQEYRKVYDQL 204
                                    10        20     || 32        42        52        62        72  ||    89        99       109       119       129       139       149       159       169       179       189       199     
                                                    26|                                            75|                                                                                                                         
                                                     29                                             83
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FFJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FFJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4FFJ)

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