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(-) Description

Title :  CRYSTAL STRUCTURE OF LEVAN FRUCTOTRANSFERASE FROM ARTHROBACTER UREAFACIENS IN COMPLEX WITH DFA-IV
 
Authors :  J. Park, S. Rhee
Date :  01 Jun 12  (Deposition) - 18 Jul 12  (Release) - 26 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Glycoside Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Park, M. I. Kim, Y. D. Park, I. Shin, J. Cha, C. H. Kim, S. Rhee
Structural And Functional Basis For Substrate Specificity And Catalysis Of Levan Fructotransferase.
J. Biol. Chem. V. 287 31233 2012
PubMed-ID: 22810228  |  Reference-DOI: 10.1074/JBC.M112.389270

(-) Compounds

Molecule 1 - LEVAN FRUCTOTRANSFERASE
    Chains: A, B, C, D
    EC Number: 4.2.2.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 41-521
    Gene: LFTA
    Organism Scientific: ARTHROBACTER UREAFACIENS
    Organism Taxid: 37931

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
10U84Ligand/Ion(1R,4R,5S,6S,7R,10R,11S,12S)-1,7-BIS(HYDROXYMETHYL)-2,8,13,14-TETRAOXATRICYCLO[8.2.1.1~4,7~]TETRADECANE-5,6,11,12-TETROL
2LBS4Ligand/Ion6-O-BETA-D-FRUCTOFURANOSYL-BETA-D-FRUCTOFURANOSE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
10U81Ligand/Ion(1R,4R,5S,6S,7R,10R,11S,12S)-1,7-BIS(HYDROXYMETHYL)-2,8,13,14-TETRAOXATRICYCLO[8.2.1.1~4,7~]TETRADECANE-5,6,11,12-TETROL
2LBS1Ligand/Ion6-O-BETA-D-FRUCTOFURANOSYL-BETA-D-FRUCTOFURANOSE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
10U81Ligand/Ion(1R,4R,5S,6S,7R,10R,11S,12S)-1,7-BIS(HYDROXYMETHYL)-2,8,13,14-TETRAOXATRICYCLO[8.2.1.1~4,7~]TETRADECANE-5,6,11,12-TETROL
2LBS1Ligand/Ion6-O-BETA-D-FRUCTOFURANOSYL-BETA-D-FRUCTOFURANOSE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
10U81Ligand/Ion(1R,4R,5S,6S,7R,10R,11S,12S)-1,7-BIS(HYDROXYMETHYL)-2,8,13,14-TETRAOXATRICYCLO[8.2.1.1~4,7~]TETRADECANE-5,6,11,12-TETROL
2LBS1Ligand/Ion6-O-BETA-D-FRUCTOFURANOSYL-BETA-D-FRUCTOFURANOSE
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
10U81Ligand/Ion(1R,4R,5S,6S,7R,10R,11S,12S)-1,7-BIS(HYDROXYMETHYL)-2,8,13,14-TETRAOXATRICYCLO[8.2.1.1~4,7~]TETRADECANE-5,6,11,12-TETROL
2LBS1Ligand/Ion6-O-BETA-D-FRUCTOFURANOSYL-BETA-D-FRUCTOFURANOSE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:168 , ASN A:180 , ARG A:204 , TYR A:207 , ASN A:224 , ASP A:226 , HOH A:865BINDING SITE FOR RESIDUE LBS A 601
2AC2SOFTWAREASN A:408 , ASN A:424 , TYR A:433 , ASP A:435 , ARG A:451 , ASP A:503 , THR D:220BINDING SITE FOR RESIDUE 0U8 A 602
3AC3SOFTWAREASP B:168 , ASN B:180 , TYR B:207 , ALA B:209 , ASN B:224 , ASP B:226 , HOH B:771BINDING SITE FOR RESIDUE LBS B 601
4AC4SOFTWAREASN B:408 , ASN B:424 , TYR B:433 , ASP B:435 , ARG B:451 , ASP B:503BINDING SITE FOR RESIDUE 0U8 B 602
5AC5SOFTWARETHR B:407 , ASP C:168 , ASN C:180 , ARG C:204 , TYR C:207 , ASN C:224 , ASP C:226 , HOH C:762BINDING SITE FOR RESIDUE LBS C 601
6AC6SOFTWAREASN C:408 , ASN C:424 , TYR C:433 , ASP C:435 , ARG C:451 , ASP C:503 , HOH C:746 , HOH C:883BINDING SITE FOR RESIDUE 0U8 C 602
7AC7SOFTWAREASP D:168 , ASN D:180 , ARG D:204 , TYR D:207 , ASN D:224 , ASP D:226 , HOH D:879 , HOH D:888BINDING SITE FOR RESIDUE LBS D 601
8AC8SOFTWAREASN D:408 , ASN D:424 , TYR D:428 , TYR D:433 , ASP D:435 , ARG D:451 , ASP D:503BINDING SITE FOR RESIDUE 0U8 D 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FFG)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:447 -Pro A:448
2Ala B:447 -Pro B:448
3Ala C:447 -Pro C:448
4Ala D:447 -Pro D:448

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FFG)

(-) Exons   (0, 0)

(no "Exon" information available for 4FFG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeeeeeeeee..eeeeeeeee......eeeeeeee......eeeeeee..........eeeee............eeeeeeee.hhhhh.eeeeeeee.......ee.......hhhhhhh.hhhhhhhhh.eeeeeeeee....eeeeeeee..eeeeeee......ee...ee..hhhhh..eeeeeeeee.....eeeeeeee..hhhhh....eeeeeeee....eee.....ee.......eeeeeee........eeeeee..........hhhhhhhhee......eeeeeeee...eeeeeeee.hhhhh.eeeeee...eee..eee.......eeeeeeeee....eeeeeeee.......eeeeee..eeeee.hhhh..........eeeee......eeeeeeeee..eeeeee....eeeeee........eeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffg A  41 AVYHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTDGVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIGRLRYAAFYTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTATTTLPDRTVDGSAVLPWNGRAYEIELDIAWDTATNVGISVGRSPDGTRHTNIGKYGADLYVDRGPSDLAGYSLAPYSRAAAPIDPGARSVHLRILVDTQSVEVFVNAGHTVLSQQVHFAEGDTGISLYTDGGPAHFTGIVVREIGQA 520
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520


Chain B from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeeeeeeeee..eeeeeeeee.......eeeeeee......eeeeeee..........eeeee............eeeeeeee.hhhhh.eeeeeeee.......ee.......hhhhhhh.hhhhhhhhh.eeeeeeeee....eeeeeeee..eeeeeee......ee...ee..hhhhh..eeeeeeeee.....eeeeeeee..hhhhh....eeeeeeee....eee.....ee.......eeeeeee........eeeeee..........hhhhhhhhee......eeeeeeee...eeeeeeee.hhhhh.eeeeeee..eee..eeee......eeeeeeeee....eeeeeeee.......eeeeee..eeeee.hhhh..........eeeee......eeeeeeeee..eeeeee....eeeeee........eeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffg B  41 AVYHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTDGVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIGRLRYAAFYTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTATTTLPDRTVDGSAVLPWNGRAYEIELDIAWDTATNVGISVGRSPDGTRHTNIGKYGADLYVDRGPSDLAGYSLAPYSRAAAPIDPGARSVHLRILVDTQSVEVFVNAGHTVLSQQVHFAEGDTGISLYTDGGPAHFTGIVVREIGQA 520
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520


Chain C from PDB  Type:PROTEIN  Length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeeee..eeeeeeeee......eeeeeeee......eeeeeee..........eeeee............eeeeeeee.hhhhh.eeeeeeee.......eeeeeeee...hhhhh.hhhhhhhhh.eeeeeeeee....eeeeeeee..eeeeeee......ee.......hhhhh..eeeeeeeee.....eeeeeeee..hhhhh....eeeeeeee....eee.....ee.......eeeeeee........eeeeee..........hhhhhhhhee......eeeeeeee...eeeeeeee.hhhhh.eeeeee...eee..eeeeeee...eeeeeeeee....eeeeeeee.......eeeeee..eeeee.hhhh..........eeeee......eeeeeeeee..eeeeee.....eeeee........eeeeeee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ffg C  41 AVYHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTDGVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIGRLRYAAFYTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTATTTLPDRTVDGSAVLPWNGRAYEIELDIAWDTATNVGISVGRSPDGTRHTNIGKYGADLYVDRGPSDLAGYSLAPYSRAAAPIDPGARSVHLRILVDTQSVEVFVNAGHTVLSQQVHFAEGDTGISLYTDGGPAHFTGIVVREIGQ 519
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510         


Chain D from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeeeeeeeee..eeeeeeeee......eeeeeeee......eeeeeee..........eeeee............eeeeeeee.hhhhh.eeeeeeee.......ee.......hhhhhhh.hhhhhhhhh.eeeeeeeee....eeeeeeee..eeeeeee......ee.......hhhhh..eeeeeeeee.....eeeeeeee..hhhhh....eeeeeeee....eee.....ee.......eeeeeee........eeeeee..........hhhhhhhhee......eeeeeeee...eeeeeeee.hhhhh.eeeeeee..eee..eeeeeee...eeeeeeeee....eeeeeeee.......eeeeee..eeeee.hhhh..........eeeee......eeeeeeeee..eeeeee....eeeeee........eeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffg D  41 AVYHMTPPSGWLCDPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTDGVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAVVALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIGRLRYAAFYTSPNLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDGEQFHADDLTPQWLDWGWDWYAAVTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELRLARQPGGWYTLLSTPVAALTNYVTATTTLPDRTVDGSAVLPWNGRAYEIELDIAWDTATNVGISVGRSPDGTRHTNIGKYGADLYVDRGPSDLAGYSLAPYSRAAAPIDPGARSVHLRILVDTQSVEVFVNAGHTVLSQQVHFAEGDTGISLYTDGGPAHFTGIVVREIGQA 520
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FFG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FFG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FFG)

(-) Gene Ontology  (6, 6)

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        Q9KJD0_9MICC | Q9KJD0: 4fff 4ffh 4ffi

(-) Related Entries Specified in the PDB File

4ffh 4ffi